Variant report

Variant	rs12570492
Chromosome Location	chr10:61346166-61346167
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10458677	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10509108	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10740776	0.99[ASN][1000 genomes]
rs10826320	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10826321	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10826324	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10826325	0.99[ASN][1000 genomes]
rs11006577	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11006586	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11006589	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11006593	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11006605	0.96[ASN][1000 genomes]
rs12217745	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12218834	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12268265	0.97[ASN][1000 genomes]
rs4341489	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61862307	0.97[ASN][1000 genomes]
rs7087413	1.00[ASN][1000 genomes]
rs7099911	1.00[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61340200-61347200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:61340200-61349400	Weak transcription	Fetal Stomach	stomach
3	chr10:61343000-61347000	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:61343800-61346800	Enhancers	Rectal Smooth Muscle	rectum
5	chr10:61344400-61346400	Enhancers	HSMMtube	muscle
6	chr10:61345400-61347800	Enhancers	Esophagus	oesophagus
7	chr10:61345400-61348000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:61345400-61348400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr10:61345600-61346200	Weak transcription	Hela-S3	cervix
10	chr10:61345600-61346600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:61345600-61346600	Weak transcription	HMEC	breast
12	chr10:61345600-61346800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:61345600-61346800	Weak transcription	Brain Angular Gyrus	brain
14	chr10:61345600-61349200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:61345600-61353400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:61346000-61347000	Weak transcription	Colon Smooth Muscle	Colon
17	chr10:61346000-61347400	Weak transcription	Brain Anterior Caudate	brain
18	chr10:61346000-61347800	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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