Variant report

Variant	rs4341489
Chromosome Location	chr10:61335076-61335077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10458677	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10509108	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10740776	0.99[ASN][1000 genomes]
rs10826320	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826321	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10826324	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10826325	0.99[ASN][1000 genomes]
rs11006577	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11006586	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006589	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11006593	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11006605	0.96[ASN][1000 genomes]
rs12217745	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12218834	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12268265	0.97[ASN][1000 genomes]
rs12570492	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61862307	0.97[ASN][1000 genomes]
rs7087413	1.00[ASN][1000 genomes]
rs7099911	1.00[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61331400-61336200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:61334800-61335200	Enhancers	HSMM	muscle
3	chr10:61334800-61335600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr10:61334800-61336400	Enhancers	HSMMtube	muscle
5	chr10:61335000-61335400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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