Variant report

Variant	rs7093529
Chromosome Location	chr10:110422433-110422434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11194217	1.00[ASN][1000 genomes]
rs11194227	1.00[AMR][1000 genomes]
rs12245997	1.00[AMR][1000 genomes]
rs12251209	1.00[ASN][1000 genomes]
rs12255930	0.92[ASN][1000 genomes]
rs12256759	1.00[AMR][1000 genomes]
rs12259119	0.85[AMR][1000 genomes]
rs1810901	0.81[ASN][1000 genomes]
rs7081161	1.00[ASN][1000 genomes]
rs7898412	0.96[ASN][1000 genomes]
rs7907358	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831983	chr10:110267919-110467318	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1050244	chr10:110279647-110779693	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv895990	chr10:110354980-110452911	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv825562	chr10:110375607-110430501	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:110421400-110422600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:110422400-110422600	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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