Variant report

Variant	rs7102949
Chromosome Location	chr11:35302470-35302471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:35302462-35304328	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35284402..35286088-chr11:35300922..35302973,2	K562	blood:

Variant related genes	Relation type
ENSG00000255004	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1042113	0.92[YRI][hapmap]
rs10488814	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10488816	0.96[YRI][hapmap]
rs10488817	0.96[YRI][hapmap]
rs10488818	0.96[YRI][hapmap]
rs1570214	0.81[YRI][hapmap]
rs16927196	1.00[TSI][hapmap]
rs16927209	0.82[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16927212	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16927214	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16927220	1.00[EUR][1000 genomes]
rs16927255	1.00[EUR][1000 genomes]
rs16927281	1.00[EUR][1000 genomes]
rs3763888	0.81[YRI][hapmap]
rs3794099	0.81[YRI][hapmap]
rs41352148	0.96[YRI][hapmap]
rs41427147	0.96[YRI][hapmap]
rs4756203	0.81[YRI][hapmap]
rs6484773	1.00[EUR][1000 genomes]
rs6484777	1.00[EUR][1000 genomes]
rs7105505	0.81[YRI][hapmap]
rs7105690	0.81[YRI][hapmap]
rs7106060	1.00[EUR][1000 genomes]
rs7109108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7121587	0.83[YRI][hapmap]
rs7125980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7130500	1.00[EUR][1000 genomes]
rs73439144	1.00[EUR][1000 genomes]
rs7941569	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7947035	0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35265800-35305800	Weak transcription	HepG2	liver
2	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
3	chr11:35285800-35308800	Weak transcription	Gastric	stomach
4	chr11:35297600-35302600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:35297600-35303000	Weak transcription	HSMMtube	muscle
6	chr11:35297600-35303400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:35297800-35303200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr11:35298000-35317200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:35298200-35303600	Weak transcription	A549	lung
10	chr11:35298200-35303800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:35298200-35326000	Weak transcription	Brain Substantia Nigra	brain
12	chr11:35298400-35302600	Weak transcription	Thymus	Thymus
13	chr11:35298400-35303600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:35298400-35303600	Weak transcription	Osteobl	bone
15	chr11:35298600-35303800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr11:35298800-35303800	Weak transcription	Stomach Mucosa	stomach
17	chr11:35298800-35304000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:35298800-35306000	Weak transcription	Brain Anterior Caudate	brain
19	chr11:35299000-35302600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:35299000-35303800	Weak transcription	Hela-S3	cervix
21	chr11:35299000-35308800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:35299000-35326600	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:35299600-35303600	Weak transcription	Esophagus	oesophagus
24	chr11:35299600-35303800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr11:35299600-35309800	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:35299800-35328600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:35300400-35309800	Strong transcription	Fetal Brain Female	brain
28	chr11:35300800-35303000	Strong transcription	Brain Germinal Matrix	brain
29	chr11:35301200-35303600	Weak transcription	Pancreas	Pancrea
30	chr11:35301800-35302800	Weak transcription	Liver	Liver
31	chr11:35302000-35302600	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr11:35302200-35302600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:35302200-35302600	Strong transcription	Brain Angular Gyrus	brain
34	chr11:35302200-35302600	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr11:35302200-35302600	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr11:35302200-35303000	Enhancers	Fetal Stomach	stomach
37	chr11:35302200-35303600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:35302200-35304000	Enhancers	Adipose Nuclei	Adipose
39	chr11:35302200-35304200	Enhancers	Left Ventricle	heart
40	chr11:35302200-35304600	Enhancers	Fetal Muscle Leg	muscle
41	chr11:35302200-35304600	Enhancers	Right Atrium	heart
42	chr11:35302200-35304800	Enhancers	NHDF-Ad	bronchial
43	chr11:35302200-35305000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:35302400-35302600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr11:35302400-35302600	Enhancers	Aorta	Aorta
46	chr11:35302400-35302800	Weak transcription	NHLF	lung
47	chr11:35302400-35303200	Enhancers	Stomach Smooth Muscle	stomach
48	chr11:35302400-35327000	Weak transcription	Brain Cingulate Gyrus	brain

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