Variant report

Variant	rs7104990
Chromosome Location	chr11:17597822-17597823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1076312	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10832802	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10832804	0.92[CEU][hapmap];0.87[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16934406	0.88[CHB][hapmap];0.88[CHD][hapmap];0.87[ASN][1000 genomes]
rs16934410	0.96[EUR][1000 genomes]
rs2240490	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2240491	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2355466	0.84[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs4562808	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4756901	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756902	0.94[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4757548	0.94[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.87[CHD][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6486380	0.95[EUR][1000 genomes]
rs7105953	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs7106548	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7122124	0.94[EUR][1000 genomes]
rs7127834	0.80[EUR][1000 genomes]
rs757986	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs757987	0.92[CEU][hapmap];0.94[CHB][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv7693	chr11:17556788-17601771	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1044126	chr11:17557715-17730646	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv540953	chr11:17557715-17730646	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv553586	chr11:17559018-17599093	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17596600-17599800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:17597400-17598000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
3	chr11:17597600-17598000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr11:17597600-17598600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:17597800-17601000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:17597800-17601800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr11:17597800-17601800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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