Variant report

Variant	rs7110020
Chromosome Location	chr11:66637129-66637130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66632881..66640228-chr11:66642679..66650860,16	MCF-7	breast:
2	chr11:66383753..66386035-chr11:66634540..66637349,2	MCF-7	breast:
3	chr11:66634682..66638253-chr11:66640416..66642598,5	MCF-7	breast:
4	chr11:66634862..66637174-chr11:66752429..66754101,2	K562	blood:
5	chr11:66383908..66386111-chr11:66634785..66638711,3	MCF-7	breast:
6	chr11:66634984..66637199-chr11:66730841..66732488,2	K562	blood:
7	chr11:66636341..66639567-chr11:66640880..66645266,6	K562	blood:
8	chr11:66246349..66248203-chr11:66635181..66637860,2	MCF-7	breast:
9	chr11:66633380..66638665-chr11:66646589..66650033,7	MCF-7	breast:
10	chr11:66635068..66638065-chr11:67082602..67085288,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255517	Chromatin interaction
ENSG00000248643	Chromatin interaction
ENSG00000239306	Chromatin interaction
ENSG00000254986	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11600012	1.00[MEX][hapmap]
rs11821197	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs11821548	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11822858	1.00[AMR][1000 genomes]
rs11823149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823888	1.00[ASW][hapmap];1.00[MKK][hapmap]
rs11825713	1.00[AMR][1000 genomes]
rs11825882	1.00[AMR][1000 genomes]
rs11827300	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs11828258	1.00[AMR][1000 genomes]
rs12290557	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs12421637	1.00[MEX][hapmap]
rs2511007	0.88[LWK][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs34275473	1.00[AMR][1000 genomes]
rs4622271	1.00[MEX][hapmap]
rs471334	1.00[CEU][hapmap]
rs6591224	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104885	1.00[AMR][1000 genomes]
rs7104906	1.00[AMR][1000 genomes]
rs7105623	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs7114229	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118311	1.00[AMR][1000 genomes]
rs7120487	1.00[AMR][1000 genomes]
rs7120560	0.87[AFR][1000 genomes]
rs7121308	1.00[AMR][1000 genomes]
rs7124532	1.00[MEX][hapmap]
rs7128335	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7131531	1.00[AMR][1000 genomes]
rs7925899	1.00[AMR][1000 genomes]
rs7929435	1.00[AMR][1000 genomes]
rs7940057	1.00[AMR][1000 genomes]
rs7946173	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs7951710	1.00[AMR][1000 genomes]
rs9666734	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508638	chr11:66541653-66643634	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv897794	chr11:66579572-66744119	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv897795	chr11:66608521-66637926	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66624200-66645000	Weak transcription	Fetal Kidney	kidney
2	chr11:66624400-66637400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr11:66624400-66640200	Weak transcription	Colon Smooth Muscle	Colon
4	chr11:66624800-66637400	Weak transcription	Aorta	Aorta
5	chr11:66625000-66648800	Weak transcription	Right Atrium	heart
6	chr11:66625400-66642200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:66625400-66642200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:66625400-66645400	Weak transcription	Fetal Lung	lung
9	chr11:66625400-66645800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:66625400-66648000	Weak transcription	Left Ventricle	heart
11	chr11:66625400-66650600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:66625800-66650800	Weak transcription	Osteobl	bone
13	chr11:66627000-66643000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:66627400-66637200	Weak transcription	Ovary	ovary
15	chr11:66627400-66638200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:66627400-66642400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:66627800-66650000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:66629800-66645600	Weak transcription	Pancreas	Pancrea
19	chr11:66630200-66645600	Weak transcription	NHLF	lung
20	chr11:66631400-66639800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:66631600-66637400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:66631800-66637600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr11:66631800-66637600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:66633600-66648000	Weak transcription	Psoas Muscle	Psoas
25	chr11:66633800-66639800	Strong transcription	NHEK	skin
26	chr11:66634600-66637800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:66634800-66639400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:66635000-66639000	Weak transcription	HSMMtube	muscle
29	chr11:66635200-66639800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:66635200-66639800	Strong transcription	Liver	Liver
31	chr11:66635200-66640000	Strong transcription	Brain Hippocampus Middle	brain
32	chr11:66635400-66637400	Genic enhancers	A549	lung
33	chr11:66635800-66639200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:66635800-66639200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:66635800-66639400	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:66636000-66637200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:66636000-66637200	Enhancers	GM12878-XiMat	blood
38	chr11:66636000-66638600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:66636000-66639400	Strong transcription	Adipose Nuclei	Adipose
40	chr11:66636000-66639800	Strong transcription	Fetal Brain Female	brain
41	chr11:66636200-66637800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr11:66636200-66638600	Weak transcription	Hela-S3	cervix
43	chr11:66636200-66639000	Strong transcription	Brain Germinal Matrix	brain
44	chr11:66636200-66639400	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:66636400-66637200	Enhancers	H1 Cell Line	embryonic stem cell
46	chr11:66636400-66637200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:66636400-66637200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:66636400-66637200	Genic enhancers	Gastric	stomach
49	chr11:66636400-66637400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr11:66636400-66637600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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