Variant report

Variant	rs9666734
Chromosome Location	chr11:66483605-66483606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:66483106..66491369-chr11:66506993..66514506,29	MCF-7	breast:
2	chr11:66474245..66476239-chr11:66481393..66484422,3	MCF-7	breast:
3	chr11:66481433..66483634-chr11:66788478..66791159,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173227	Chromatin interaction
ENSG00000173715	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11821197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821548	1.00[AMR][1000 genomes]
rs11822858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823149	1.00[AMR][1000 genomes]
rs11823180	1.00[AMR][1000 genomes]
rs11823888	1.00[AFR][1000 genomes]
rs11825713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828658	0.82[AFR][1000 genomes]
rs2511007	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34275473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6591224	1.00[AMR][1000 genomes]
rs7104885	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104906	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7105623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110020	1.00[AMR][1000 genomes]
rs7114229	1.00[AMR][1000 genomes]
rs7118311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7120487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128335	1.00[AMR][1000 genomes]
rs7131531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7925899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7929435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7940057	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7946173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7951710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522277	chr11:66234023-66493825	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
2	nsv897789	chr11:66372390-66634397	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv897790	chr11:66414915-66626234	Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv897791	chr11:66442855-66533469	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv427891	chr11:66456140-66606701	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv468602	chr11:66468469-66634397	Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
7	nsv555225	chr11:66468469-66634397	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66446200-66485800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:66452200-66485600	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:66456400-66494600	Weak transcription	Right Atrium	heart
4	chr11:66462600-66484000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:66462800-66484400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:66463000-66485000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:66465600-66487000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:66467400-66485200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:66468400-66484600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:66468800-66487800	Strong transcription	Fetal Brain Female	brain
11	chr11:66469600-66486800	Weak transcription	A549	lung
12	chr11:66469800-66484800	Weak transcription	HepG2	liver
13	chr11:66471600-66489200	Strong transcription	Brain Germinal Matrix	brain
14	chr11:66471800-66485000	Strong transcription	H1 Cell Line	embryonic stem cell
15	chr11:66473000-66484200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:66473000-66485600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:66473400-66484800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:66473600-66484400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:66476000-66485000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:66478400-66484200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:66478400-66486600	Weak transcription	Hela-S3	cervix
22	chr11:66478600-66484800	Weak transcription	Lung	lung
23	chr11:66479200-66485000	Weak transcription	Fetal Intestine Large	intestine
24	chr11:66481600-66487000	Weak transcription	HMEC	breast
25	chr11:66481800-66487200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:66481800-66493400	Weak transcription	Fetal Brain Male	brain
27	chr11:66482200-66484800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:66482200-66486600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr11:66482600-66487000	Weak transcription	Spleen	Spleen
30	chr11:66482600-66494600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:66482800-66484800	Weak transcription	Gastric	stomach
32	chr11:66482800-66485200	Weak transcription	Fetal Kidney	kidney
33	chr11:66482800-66485600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:66482800-66486600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:66482800-66488000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:66482800-66492600	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:66483000-66484200	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr11:66483000-66484400	Weak transcription	NHEK	skin
39	chr11:66483000-66485600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:66483000-66486800	Weak transcription	Brain Angular Gyrus	brain
41	chr11:66483200-66484400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:66483200-66484400	Weak transcription	Pancreas	Pancrea
43	chr11:66483200-66485000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:66483200-66485400	Enhancers	Fetal Muscle Leg	muscle
45	chr11:66483200-66486800	Weak transcription	K562	blood
46	chr11:66483200-66487600	Weak transcription	Brain Anterior Caudate	brain
47	chr11:66483200-66487800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:66483200-66488000	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr11:66483400-66484600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:66483400-66484800	Weak transcription	Esophagus	oesophagus

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