Variant report

Variant	rs7128335
Chromosome Location	chr11:66651690-66651691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66623800..66625594-chr11:66650788..66652372,2	K562	blood:
2	chr11:66640579..66644175-chr11:66648917..66652443,5	MCF-7	breast:
3	chr11:66453511..66455153-chr11:66650234..66652449,2	MCF-7	breast:
4	chr11:66600847..66602669-chr11:66650829..66652399,2	MCF-7	breast:
5	chr11:66650776..66653492-chr11:66654668..66657243,4	K562	blood:
6	chr11:66609335..66612461-chr11:66650852..66654865,3	MCF-7	breast:
7	chr11:66622039..66625017-chr11:66649719..66652504,2	K562	blood:
8	chr11:66622201..66627158-chr11:66645726..66651981,9	MCF-7	breast:
9	chr11:66651148..66654052-chr11:66754978..66757094,2	K562	blood:
10	chr11:66650937..66653483-chr11:66658132..66659731,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000173653	Chromatin interaction
ENSG00000173898	Chromatin interaction
ENSG00000173621	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11821197	1.00[AMR][1000 genomes]
rs11821548	1.00[AMR][1000 genomes]
rs11822858	1.00[AMR][1000 genomes]
rs11823149	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823180	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825713	1.00[AMR][1000 genomes]
rs11825882	1.00[AMR][1000 genomes]
rs11827300	1.00[AMR][1000 genomes]
rs11828258	1.00[AMR][1000 genomes]
rs2511007	1.00[AMR][1000 genomes]
rs34275473	1.00[AMR][1000 genomes]
rs6591224	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7104885	1.00[AMR][1000 genomes]
rs7104906	1.00[AMR][1000 genomes]
rs7105623	1.00[AMR][1000 genomes]
rs7110020	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114229	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7118311	1.00[AMR][1000 genomes]
rs7120487	1.00[AMR][1000 genomes]
rs7121308	1.00[AMR][1000 genomes]
rs7131531	1.00[AMR][1000 genomes]
rs7925899	1.00[AMR][1000 genomes]
rs7929435	1.00[AMR][1000 genomes]
rs7940057	1.00[AMR][1000 genomes]
rs7946173	1.00[AMR][1000 genomes]
rs7951710	1.00[AMR][1000 genomes]
rs9666734	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897794	chr11:66579572-66744119	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv555226	chr11:66579572-66845362	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
3	nsv428574	chr11:66619002-66804133	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv832194	chr11:66634462-66805980	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66639000-66657200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:66639200-66657400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:66639400-66659800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:66643200-66653000	Enhancers	Liver	Liver
5	chr11:66645200-66652000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:66645600-66652400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:66646000-66660800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:66647600-66653400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:66648600-66652400	Weak transcription	Placenta	Placenta
10	chr11:66648600-66653400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:66648600-66653800	Weak transcription	Left Ventricle	heart
12	chr11:66648600-66657600	Weak transcription	GM12878-XiMat	blood
13	chr11:66648800-66653200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:66649000-66654200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr11:66649200-66655200	Weak transcription	Right Atrium	heart
16	chr11:66649400-66652600	Enhancers	Fetal Muscle Trunk	muscle
17	chr11:66650800-66653400	Enhancers	HepG2	liver
18	chr11:66650800-66653800	Weak transcription	Psoas Muscle	Psoas
19	chr11:66650800-66654000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:66651000-66652000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr11:66651000-66652200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr11:66651000-66653000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:66651000-66653000	Weak transcription	Brain Substantia Nigra	brain
24	chr11:66651000-66653200	Weak transcription	Fetal Lung	lung
25	chr11:66651000-66653400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:66651000-66657200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:66651000-66659600	Weak transcription	Lung	lung
28	chr11:66651000-66664000	Weak transcription	Right Ventricle	heart
29	chr11:66651200-66652400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:66651200-66652800	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:66651200-66653000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr11:66651200-66653000	Weak transcription	K562	blood
33	chr11:66651200-66653200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:66651200-66653200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:66651200-66653400	Weak transcription	Brain Anterior Caudate	brain
36	chr11:66651200-66653400	Weak transcription	Gastric	stomach
37	chr11:66651200-66653800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:66651200-66653800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:66651200-66653800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:66651200-66654200	Weak transcription	NHLF	lung
41	chr11:66651200-66654400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:66651200-66656200	Weak transcription	Fetal Intestine Large	intestine
43	chr11:66651200-66657400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:66651200-66659200	Weak transcription	HMEC	breast
45	chr11:66651200-66659600	Weak transcription	Esophagus	oesophagus
46	chr11:66651200-66665600	Weak transcription	Brain Germinal Matrix	brain
47	chr11:66651200-66669800	Weak transcription	Fetal Intestine Small	intestine
48	chr11:66651200-66673200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:66651400-66652000	Enhancers	Hela-S3	cervix
50	chr11:66651400-66652000	Weak transcription	NHEK	skin

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