Variant report

Variant	rs711055
Chromosome Location	chr8:85447196-85447197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs317941	0.85[EUR][1000 genomes]
rs317943	0.85[EUR][1000 genomes]
rs317944	0.85[EUR][1000 genomes]
rs698149	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs711010	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs711013	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs711015	1.00[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs711016	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs711018	1.00[YRI][hapmap]
rs711019	1.00[YRI][hapmap]
rs711039	1.00[YRI][hapmap]
rs711043	1.00[YRI][hapmap]
rs711047	1.00[YRI][hapmap]
rs711049	1.00[YRI][hapmap]
rs711053	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs711056	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs783510	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs783786	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85434800-85447400	Weak transcription	Pancreas	Pancrea
2	chr8:85436200-85461200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links