Variant report
| Variant | rs698149 |
|---|---|
| Chromosome Location | chr8:85365678-85365679 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10093323 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap] |
| rs10099145 | 0.88[TSI][hapmap] |
| rs12334874 | 1.00[CEU][hapmap] |
| rs317939 | 1.00[CEU][hapmap];0.87[TSI][hapmap] |
| rs317941 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs317943 | 0.85[EUR][1000 genomes] |
| rs317944 | 0.85[EUR][1000 genomes] |
| rs317950 | 1.00[CEU][hapmap] |
| rs317951 | 1.00[CEU][hapmap] |
| rs711008 | 1.00[CEU][hapmap] |
| rs711010 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs711013 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs711015 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs711016 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs711018 | 1.00[CEU][hapmap];1.00[TSI][hapmap] |
| rs711019 | 1.00[CEU][hapmap] |
| rs711029 | 1.00[YRI][hapmap] |
| rs711039 | 1.00[CEU][hapmap] |
| rs711047 | 0.88[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs711053 | 1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs711055 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs711056 | 1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs783510 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs783786 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831375 | chr8:85272352-85463621 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | esv3481417 | chr8:85279453-86145229 | Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 3 | esv3481418 | chr8:85279453-86145229 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:85361800-85371600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr8:85364400-85366200 | Enhancers | Liver | Liver |
