Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10093323	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10099145	1.00[TSI][hapmap]
rs12171666	0.88[TSI][hapmap]
rs12334874	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs28379366	0.81[EUR][1000 genomes]
rs28380661	0.84[EUR][1000 genomes]
rs317941	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs317943	1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs317944	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs317950	1.00[CEU][hapmap]
rs317951	1.00[CEU][hapmap]
rs58308118	0.84[EUR][1000 genomes]
rs698149	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs711008	1.00[CEU][hapmap]
rs711010	1.00[CEU][hapmap]
rs711013	1.00[CEU][hapmap]
rs711015	1.00[CEU][hapmap]
rs711016	1.00[CEU][hapmap]
rs711018	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs711019	1.00[CEU][hapmap]
rs711029	0.82[CEU][hapmap]
rs711034	0.82[CEU][hapmap]
rs711037	0.82[CEU][hapmap]
rs711047	0.82[CEU][hapmap];0.87[TSI][hapmap]
rs711053	1.00[CEU][hapmap];0.87[TSI][hapmap]
rs783510	1.00[CEU][hapmap]
rs9632839	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1029152	chr8:85292559-85352660	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2761174	chr8:85292571-85342761	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1031918	chr8:85293666-85342749	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85338000-85339800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:85338200-85341200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:85338200-85341400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:85338800-85340200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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