Variant report
| Variant | rs12171666 |
|---|---|
| Chromosome Location | chr8:85213817-85213818 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:85209287..85211713-chr8:85211805..85214280,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10093323 | 0.89[TSI][hapmap] |
| rs10094547 | 1.00[ASW][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10095560 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs10099145 | 1.00[CEU][hapmap];0.89[TSI][hapmap] |
| rs10111128 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs16912615 | 0.95[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs16912698 | 1.00[ASN][1000 genomes] |
| rs1873562 | 1.00[ASN][1000 genomes] |
| rs28379366 | 0.91[EUR][1000 genomes] |
| rs28380661 | 0.87[EUR][1000 genomes] |
| rs28459024 | 0.96[EUR][1000 genomes] |
| rs28590718 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28722870 | 0.96[EUR][1000 genomes] |
| rs317939 | 0.88[TSI][hapmap] |
| rs317943 | 1.00[CEU][hapmap] |
| rs58308118 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60228936 | 1.00[ASN][1000 genomes] |
| rs60747099 | 1.00[ASN][1000 genomes] |
| rs6984895 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6995039 | 1.00[ASN][1000 genomes] |
| rs711010 | 0.82[CEU][hapmap] |
| rs73293008 | 1.00[ASN][1000 genomes] |
| rs73306923 | 1.00[ASN][1000 genomes] |
| rs73306962 | 1.00[ASN][1000 genomes] |
| rs7831643 | 1.00[ASN][1000 genomes] |
| rs9632839 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2753846 | chr8:84637092-85239703 | Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv831374 | chr8:85103604-85308976 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv1842719 | chr8:85198548-85268951 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
