Variant report

Variant	rs28379366
Chromosome Location	chr8:85268315-85268316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10095560	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10111128	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28380661	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28459024	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28590718	0.85[EUR][1000 genomes]
rs28722870	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs317939	0.81[EUR][1000 genomes]
rs58308118	0.96[EUR][1000 genomes]
rs6984895	0.87[EUR][1000 genomes]
rs9632839	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:102 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1028784	chr8:85215670-85268654	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1034144	chr8:85230634-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1028025	chr8:85239131-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1020913	chr8:85240474-85268654	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv611647	chr8:85241871-85268622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv611648	chr8:85241871-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1020493	chr8:85246493-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv2764062	chr8:85251665-85270692	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv1835731	chr8:85252029-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv611649	chr8:85254032-85268622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv1839552	chr8:85254468-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv6281	chr8:85256650-85271875	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv1835283	chr8:85257540-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv1835635	chr8:85257540-85268951	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv1841881	chr8:85257540-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv1842578	chr8:85257540-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv437075	chr8:85257540-85271329	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv437076	chr8:85257540-85271644	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	nsv1029732	chr8:85257555-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv1026499	chr8:85257555-85270837	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv1030318	chr8:85257555-85271329	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
24	nsv1023024	chr8:85257959-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv1806721	chr8:85257984-85274061	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv3358179	chr8:85259847-85270795	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv3335073	chr8:85260297-85270145	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
28	esv3479550	chr8:85260342-85269415	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
29	nsv8361	chr8:85260488-85269938	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
30	esv3524409	chr8:85260553-85269936	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv3479553	chr8:85260839-85269277	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv3402820	chr8:85260855-85269278	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
33	nsv820872	chr8:85260868-85269503	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
34	nsv824678	chr8:85260868-85269503	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
35	esv3353803	chr8:85260872-85269253	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
36	esv3524407	chr8:85260884-85269206	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
37	esv3479549	chr8:85260889-85269243	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
38	nsv436574	chr8:85260892-85269319	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
39	esv3479548	chr8:85260904-85269199	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
40	esv3524411	chr8:85260905-85269206	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
41	esv3524410	chr8:85260905-85269217	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
42	esv3368011	chr8:85260911-85269222	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
43	nsv824679	chr8:85260912-85268994	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
44	esv3479551	chr8:85260920-85269244	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
45	nsv819991	chr8:85260939-85269167	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
46	nsv824680	chr8:85260960-85268994	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
47	esv3438698	chr8:85260962-85269179	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
48	nsv499568	chr8:85260966-85269174	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
49	esv3479554	chr8:85260967-85269174	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
50	nsv515106	chr8:85260981-85268853	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85267200-85272200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:85268200-85268400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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