Variant report

Variant	rs10095560
Chromosome Location	chr8:85159400-85159401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10099145	1.00[CEU][hapmap]
rs10111128	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12171666	1.00[CEU][hapmap]
rs28379366	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28380661	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28459024	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28590718	0.90[EUR][1000 genomes]
rs28722870	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs317943	1.00[CEU][hapmap]
rs58308118	0.84[EUR][1000 genomes]
rs6984895	0.92[EUR][1000 genomes]
rs9632839	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85156200-85160200	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr8:85156200-85166000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:85156200-85169400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:85157800-85160600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:85157800-85160800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:85158000-85161000	Enhancers	Fetal Brain Female	brain
7	chr8:85158400-85159600	Weak transcription	Brain Germinal Matrix	brain
8	chr8:85158400-85160400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:85159200-85161000	Enhancers	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links