Variant report

Variant	rs10099145
Chromosome Location	chr8:85220250-85220251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10093323	1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10095560	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10111128	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12171666	1.00[CEU][hapmap];0.89[TSI][hapmap]
rs28379366	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28380661	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28459024	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28590718	0.94[EUR][1000 genomes]
rs28722870	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs317939	1.00[TSI][hapmap]
rs317943	1.00[CEU][hapmap]
rs58308118	0.87[EUR][1000 genomes]
rs698149	0.88[TSI][hapmap]
rs6984895	0.96[EUR][1000 genomes]
rs711010	0.82[CEU][hapmap]
rs711018	0.88[TSI][hapmap]
rs9632839	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1028784	chr8:85215670-85268654	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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