Variant report

Variant	rs1873562
Chromosome Location	chr8:85168086-85168087
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10094547	1.00[ASN][1000 genomes]
rs1388421	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16912615	1.00[ASN][1000 genomes]
rs16912698	0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28590718	1.00[ASN][1000 genomes]
rs58308118	1.00[ASN][1000 genomes]
rs60228936	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60747099	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6984895	1.00[ASN][1000 genomes]
rs6995039	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73293008	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73306923	1.00[ASN][1000 genomes]
rs73306962	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7831643	0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85156200-85169400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:85165400-85178000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:85166200-85169800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:85166200-85171000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr8:85166400-85168600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:85167400-85171000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr8:85168000-85170000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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