Variant report

Variant	rs60228936
Chromosome Location	chr8:85267340-85267341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10094547	1.00[ASN][1000 genomes]
rs16912615	1.00[ASN][1000 genomes]
rs16912698	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1873562	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28590718	1.00[ASN][1000 genomes]
rs58308118	1.00[ASN][1000 genomes]
rs60747099	1.00[ASN][1000 genomes]
rs6984895	1.00[ASN][1000 genomes]
rs6995039	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73293008	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73306923	1.00[ASN][1000 genomes]
rs73306962	1.00[ASN][1000 genomes]
rs7831643	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:112 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv1842719	chr8:85198548-85268951	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1028784	chr8:85215670-85268654	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1034144	chr8:85230634-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1028025	chr8:85239131-85268654	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1836296	chr8:85239703-85267546	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv1020913	chr8:85240474-85268654	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv611647	chr8:85241871-85268622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv611648	chr8:85241871-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv1020493	chr8:85246493-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv2764062	chr8:85251665-85270692	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv1835731	chr8:85252029-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv611649	chr8:85254032-85268622	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv1839552	chr8:85254468-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv6281	chr8:85256650-85271875	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv1834327	chr8:85257540-85267546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv1837828	chr8:85257540-85267546	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv1838371	chr8:85257540-85267546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv1839106	chr8:85257540-85267546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv1841987	chr8:85257540-85267546	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv1835283	chr8:85257540-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv1835635	chr8:85257540-85268951	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv1841881	chr8:85257540-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv1842578	chr8:85257540-85268951	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
25	nsv437075	chr8:85257540-85271329	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv437076	chr8:85257540-85271644	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
27	nsv1029732	chr8:85257555-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
28	nsv1026499	chr8:85257555-85270837	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
29	nsv1030318	chr8:85257555-85271329	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv1023024	chr8:85257959-85268654	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv1806721	chr8:85257984-85274061	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv3358179	chr8:85259847-85270795	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
33	esv3335073	chr8:85260297-85270145	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
34	esv3479550	chr8:85260342-85269415	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
35	nsv8361	chr8:85260488-85269938	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
36	esv3524409	chr8:85260553-85269936	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
37	esv1830177	chr8:85260623-85268003	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
38	esv3479553	chr8:85260839-85269277	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
39	esv3402820	chr8:85260855-85269278	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
40	nsv820872	chr8:85260868-85269503	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
41	nsv824678	chr8:85260868-85269503	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
42	esv3353803	chr8:85260872-85269253	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
43	esv3524407	chr8:85260884-85269206	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
44	esv3479549	chr8:85260889-85269243	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
45	nsv436574	chr8:85260892-85269319	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
46	esv3479548	chr8:85260904-85269199	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
47	esv3524411	chr8:85260905-85269206	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
48	esv3524410	chr8:85260905-85269217	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
49	esv3368011	chr8:85260911-85269222	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
50	nsv824679	chr8:85260912-85268994	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85265600-85267400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr8:85265600-85267600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:85265600-85267800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:85265600-85268200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr8:85265800-85267400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:85266400-85268200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr8:85267200-85268200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:85267200-85272200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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