Variant report

Variant	rs10094547
Chromosome Location	chr8:85165783-85165784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10088997	1.00[EUR][1000 genomes]
rs12171666	1.00[ASW][hapmap];0.93[LWK][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap]
rs16912615	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16912698	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs1873562	1.00[ASN][1000 genomes]
rs28590718	1.00[ASN][1000 genomes]
rs28725264	1.00[EUR][1000 genomes]
rs58308118	1.00[ASN][1000 genomes]
rs60228936	1.00[ASN][1000 genomes]
rs60747099	1.00[ASN][1000 genomes]
rs6984895	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6995039	1.00[ASN][1000 genomes]
rs73293008	1.00[ASN][1000 genomes]
rs73306923	1.00[ASN][1000 genomes]
rs73306962	1.00[ASN][1000 genomes]
rs7831643	1.00[CHD][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831374	chr8:85103604-85308976	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv522543	chr8:85164821-85165783	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10094547	WWP1	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85156200-85166000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:85156200-85169400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:85161000-85165800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:85161200-85165800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:85164600-85166400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:85165000-85166200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr8:85165000-85167400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:85165400-85178000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:85165600-85166400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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