Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10093323	1.00[CEU][hapmap]
rs12334874	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs317939	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs317943	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs317944	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs317950	1.00[CEU][hapmap]
rs317951	1.00[CEU][hapmap]
rs698149	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs711008	1.00[CEU][hapmap]
rs711010	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs711013	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs711015	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs711016	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs711018	1.00[CEU][hapmap]
rs711019	1.00[CEU][hapmap]
rs711039	1.00[CEU][hapmap]
rs711047	0.88[CEU][hapmap]
rs711053	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs711055	0.85[EUR][1000 genomes]
rs711056	0.85[EUR][1000 genomes]
rs783510	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs783786	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1029152	chr8:85292559-85352660	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv2761174	chr8:85292571-85342761	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1031918	chr8:85293666-85342749	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85338200-85341200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:85338200-85341400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:85340000-85343600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:85340200-85341200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:85340200-85341200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:85340200-85341400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:85340200-85341400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:85340200-85342000	Enhancers	Fetal Brain Male	brain
9	chr8:85340600-85343600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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