Variant report

Variant	rs7111865
Chromosome Location	chr11:32602500-32602501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr11:32602487-32603005	A549	lung:	n/a	n/a
2	FOSL2	chr11:32602487-32602839	HepG2	liver:	n/a	n/a
3	FOXA2	chr11:32602441-32602824	HepG2	liver:	n/a	n/a
4	TEAD4	chr11:32602452-32602919	HepG2	liver:	n/a	n/a
5	CEBPB	chr11:32602380-32602951	A549	lung:	n/a	n/a
6	FOXA1	chr11:32602435-32602906	HepG2	liver:	n/a	n/a
7	CEBPB	chr11:32602474-32602829	HepG2	liver:	n/a	n/a
8	MYC	chr11:32602410-32602819	MCF10A-Er-Src	breast:	n/a	n/a
9	FOS	chr11:32602499-32602848	MCF10A-Er-Src	breast:	n/a	n/a
10	FOXA1	chr11:32602457-32602882	HepG2	liver:	n/a	n/a
11	FOXA2	chr11:32602430-32603139	A549	lung:	n/a	n/a
12	SP1	chr11:32602404-32602920	A549	lung:	n/a	n/a
13	FOSL2	chr11:32602447-32602862	A549	lung:	n/a	n/a
14	FOXA1	chr11:32602332-32602863	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32599748..32604204-chr11:32604276..32608693,5	MCF-7	breast:

Variant related genes	Relation type
EIF3M	TF binding region
ENSG00000149100	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11031883	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12276207	0.94[ASN][1000 genomes]
rs12787891	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12789547	0.90[EUR][1000 genomes]
rs12789734	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12792216	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12792258	1.00[CEU][hapmap]
rs12794499	0.93[EUR][1000 genomes]
rs12796070	0.90[EUR][1000 genomes]
rs12805291	0.93[EUR][1000 genomes]
rs12807888	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12807989	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12808227	0.90[EUR][1000 genomes]
rs34254797	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34480242	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34495676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35020878	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35253549	0.93[EUR][1000 genomes]
rs36071525	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4359178	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs67535916	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67559057	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7107642	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.87[TSI][hapmap]
rs7126059	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.93[EUR][1000 genomes]
rs71479164	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71479166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936829	1.00[CEU][hapmap]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32597400-32604200	Weak transcription	K562	blood
2	chr11:32602200-32602600	Enhancers	HepG2	liver
3	chr11:32602200-32603600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:32602400-32602800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:32602400-32603000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr11:32602400-32603400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:32602400-32603800	Enhancers	A549	lung

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