Variant report

Variant	rs7115455
Chromosome Location	chr11:64764094-64764095
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64646125..64646664-chr11:64764042..64764891,2	K562	blood:
2	chr11:64763361..64766296-chr11:64947138..64948729,2	K562	blood:
3	chr11:64690425..64693604-chr11:64763571..64767241,5	K562	blood:
4	chr11:64655267..64656186-chr11:64764041..64764939,3	MCF-7	breast:
5	chr11:64702930..64703805-chr11:64763957..64764714,2	MCF-7	breast:
6	chr11:64684548..64685160-chr11:64763902..64764623,2	K562	blood:
7	chr11:64759646..64761184-chr11:64762950..64764464,2	K562	blood:
8	chr11:64568687..64571472-chr11:64762371..64764508,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000068971	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000110046	Chromatin interaction
ENSG00000149735	Chromatin interaction
ENSG00000168067	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10897540	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10897541	0.82[ASN][1000 genomes]
rs35733402	0.83[ASN][1000 genomes]
rs4930692	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7105002	0.83[ASN][1000 genomes]
rs733303	0.83[AFR][1000 genomes]
rs733945	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7933779	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7947883	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64752400-64764200	Weak transcription	Aorta	Aorta
2	chr11:64756400-64764600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:64757200-64766200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:64758000-64764200	Weak transcription	A549	lung
5	chr11:64758000-64766000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:64758200-64764200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:64758200-64764200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:64758400-64765800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:64759600-64764200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:64763400-64764600	Active TSS	Pancreas	Pancrea
11	chr11:64763600-64765000	Flanking Active TSS	Liver	Liver
12	chr11:64763600-64765200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
13	chr11:64763800-64764200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr11:64763800-64764200	Active TSS	Right Atrium	heart
15	chr11:64763800-64764200	Flanking Active TSS	HepG2	liver
16	chr11:64763800-64764400	Active TSS	Sigmoid Colon	Sigmoid Colon
17	chr11:64763800-64764400	Active TSS	Small Intestine	intestine
18	chr11:64763800-64764600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:64763800-64764600	Flanking Active TSS	Fetal Intestine Large	intestine
20	chr11:64763800-64764600	Flanking Active TSS	Fetal Muscle Leg	muscle
21	chr11:64763800-64764600	Active TSS	Gastric	stomach
22	chr11:64763800-64764600	Active TSS	Psoas Muscle	Psoas
23	chr11:64763800-64764800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:64763800-64764800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
25	chr11:64763800-64764800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr11:64763800-64764800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:64763800-64764800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:64763800-64764800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:64763800-64764800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:64763800-64764800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:64763800-64764800	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr11:64763800-64764800	Active TSS	Brain Anterior Caudate	brain
33	chr11:64763800-64764800	Active TSS	Brain Hippocampus Middle	brain
34	chr11:64763800-64764800	Enhancers	Fetal Muscle Trunk	muscle
35	chr11:64763800-64764800	Flanking Active TSS	Lung	lung
36	chr11:64763800-64764800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
37	chr11:64763800-64765000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr11:64763800-64765000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:64763800-64765000	Active TSS	Brain Angular Gyrus	brain
40	chr11:64763800-64765000	Flanking Active TSS	Colonic Mucosa	Colon
41	chr11:64763800-64765000	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr11:64763800-64765000	Flanking Active TSS	Rectal Smooth Muscle	rectum
43	chr11:64763800-64765000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr11:64763800-64765000	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr11:64763800-64765200	Enhancers	Primary B cells from cord blood	blood
46	chr11:64763800-64765200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
47	chr11:64763800-64765200	Flanking Active TSS	K562	blood
48	chr11:64763800-64765200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr11:64764000-64764200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:64764000-64764200	Enhancers	HUES6 Cell Line	embryonic stem cell

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