Variant report

Variant	rs733945
Chromosome Location	chr11:64770458-64770459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64769264..64770783-chr11:64949717..64951768,2	K562	blood:
2	chr11:64655617..64657226-chr11:64769423..64771282,2	MCF-7	breast:
3	chr11:64644032..64646789-chr11:64769911..64772429,2	K562	blood:
4	chr11:64769201..64771374-chr11:64779772..64781623,2	MCF-7	breast:
5	chr11:64769114..64776603-chr11:64778484..64784252,8	K562	blood:
6	chr11:64764141..64765746-chr11:64770247..64772433,2	K562	blood:
7	chr11:64764651..64767440-chr11:64768084..64771691,3	MCF-7	breast:
8	chr11:64764913..64771112-chr11:64779041..64784424,8	K562	blood:
9	chr11:64644673..64646789-chr11:64768413..64771411,2	K562	blood:
10	chr11:64767765..64771018-chr11:64774055..64777389,4	K562	blood:
11	chr11:64770114..64772909-chr11:64824549..64827070,2	K562	blood:

No data

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Variant related genes	Relation type
ENSG00000168062	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000168060	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000273003	Chromatin interaction
ENSG00000213465	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10897540	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10897541	0.80[ASN][1000 genomes]
rs11231908	0.82[AFR][1000 genomes]
rs35733402	0.86[ASN][1000 genomes]
rs4930692	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7105002	0.86[ASN][1000 genomes]
rs7115455	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs733303	0.87[AFR][1000 genomes]
rs7933779	0.83[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs7947883	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64764800-64774000	Weak transcription	NHDF-Ad	bronchial
2	chr11:64764800-64774000	Weak transcription	NHLF	lung
3	chr11:64764800-64781200	Weak transcription	Right Atrium	heart
4	chr11:64765000-64774000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:64765000-64780600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:64767400-64774000	Weak transcription	A549	lung
7	chr11:64767400-64780400	Weak transcription	Pancreas	Pancrea
8	chr11:64769000-64770800	Enhancers	HepG2	liver
9	chr11:64769200-64771200	Enhancers	Fetal Muscle Leg	muscle
10	chr11:64769200-64771400	Enhancers	Fetal Muscle Trunk	muscle
11	chr11:64769800-64773200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:64769800-64774000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:64770000-64770800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:64770000-64770800	Weak transcription	Right Ventricle	heart
15	chr11:64770000-64771000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:64770000-64774200	Weak transcription	Left Ventricle	heart
17	chr11:64770200-64771000	Enhancers	Placenta	Placenta
18	chr11:64770400-64771200	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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