Variant report

Variant	rs7117345
Chromosome Location	chr11:83662647-83662648
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs11233825	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs11233826	0.93[EUR][1000 genomes]
rs11233828	0.92[EUR][1000 genomes]
rs11233829	0.93[EUR][1000 genomes]
rs11233833	0.93[EUR][1000 genomes]
rs11233834	0.93[EUR][1000 genomes]
rs11233835	0.93[EUR][1000 genomes]
rs11233836	0.87[EUR][1000 genomes]
rs11233838	0.87[EUR][1000 genomes]
rs11233839	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs11233840	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs11233841	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs11233845	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs11233846	0.93[EUR][1000 genomes]
rs11233847	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs11233848	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs11233851	0.91[EUR][1000 genomes]
rs11233852	0.98[EUR][1000 genomes]
rs11233853	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs11233854	0.93[EUR][1000 genomes]
rs11233855	0.93[EUR][1000 genomes]
rs11233856	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs11233857	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs11233859	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs11233860	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs11233861	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs11233862	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs11233863	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs11233864	0.93[EUR][1000 genomes]
rs12270426	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs12271485	0.93[EUR][1000 genomes]
rs12271521	0.93[EUR][1000 genomes]
rs12272484	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs12273905	0.92[EUR][1000 genomes]
rs12273926	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs12275162	0.93[EUR][1000 genomes]
rs12278816	0.92[EUR][1000 genomes]
rs12279346	0.92[EUR][1000 genomes]
rs12279738	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs12281568	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12283496	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs12283541	1.00[EUR][1000 genomes]
rs12284526	0.92[EUR][1000 genomes]
rs12284566	0.92[EUR][1000 genomes]
rs12285562	0.92[EUR][1000 genomes]
rs12287463	0.93[EUR][1000 genomes]
rs12288383	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs12288437	0.90[EUR][1000 genomes]
rs12288916	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs12291418	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs12292654	0.92[EUR][1000 genomes]
rs12292970	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs12294736	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12295779	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs12295784	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs1384754	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs1384755	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs1471685	0.93[EUR][1000 genomes]
rs1471686	0.93[EUR][1000 genomes]
rs1483402	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs1483403	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs1483404	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs1483405	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs1483406	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs1483407	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs1483408	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs1483409	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs5006941	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs7102284	0.93[EUR][1000 genomes]
rs7105937	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs7107323	0.93[CEU][hapmap];0.95[EUR][1000 genomes]
rs7116071	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs7116793	0.93[EUR][1000 genomes]
rs7131673	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs7924381	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7936991	0.93[EUR][1000 genomes]
rs7937234	1.00[EUR][1000 genomes]
rs7952093	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs7952365	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83660000-83662800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:83660000-83664200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr11:83660400-83662800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr11:83660600-83664200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:83661800-83663000	Enhancers	Brain Substantia Nigra	brain
6	chr11:83661800-83663200	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:83662400-83662800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:83662400-83662800	Enhancers	Brain Germinal Matrix	brain
9	chr11:83662400-83663000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:83662400-83663000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:83662400-83663000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:83662400-83663000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr11:83662400-83663200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:83662400-83663200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:83662400-83663200	Enhancers	Stomach Mucosa	stomach
16	chr11:83662400-83663400	Enhancers	Brain Hippocampus Middle	brain
17	chr11:83662600-83662800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:83662600-83663000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr11:83662600-83676200	Weak transcription	Brain Angular Gyrus	brain

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