Variant report

Variant	rs1483402
Chromosome Location	chr11:83665360-83665361
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10898185	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs11233825	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233826	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233828	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11233829	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233833	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233834	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233835	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233836	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11233838	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11233839	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11233840	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233841	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233845	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233847	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233848	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11233852	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11233853	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11233854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233856	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233857	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11233859	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11233860	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11233861	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs11233862	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11233863	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs11233864	1.00[EUR][1000 genomes]
rs12270426	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[EUR][1000 genomes]
rs12271485	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12271521	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12272484	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273905	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12273926	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12274345	1.00[MEX][hapmap]
rs12275162	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12278816	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12279346	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12279738	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12281568	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs12283496	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12283541	0.93[EUR][1000 genomes]
rs12284526	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12284566	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12285562	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12286565	1.00[MEX][hapmap]
rs12287463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288383	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12288437	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12288916	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs12289688	1.00[MEX][hapmap]
rs12291418	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292654	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12292970	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12294736	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs12295779	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12295784	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1384754	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1384755	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1471685	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1471686	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1483403	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1483404	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1483405	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1483406	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1483407	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1483409	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs5006941	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7102284	1.00[EUR][1000 genomes]
rs7105937	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7107323	1.00[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7116071	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7116793	1.00[EUR][1000 genomes]
rs7117345	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs7131673	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7924381	0.93[CEU][hapmap];0.93[EUR][1000 genomes]
rs7936991	1.00[EUR][1000 genomes]
rs7937234	0.93[EUR][1000 genomes]
rs7952093	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7952365	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83662600-83676200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83662800-83667800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:83663000-83675800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:83663000-83676000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83663200-83676000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:83663400-83665600	Weak transcription	Fetal Lung	lung
7	chr11:83663400-83675600	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:83664000-83666400	Weak transcription	Gastric	stomach

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