Variant report

Variant	rs7119709
Chromosome Location	chr11:10626691-10626692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10604416..10607231-chr11:10624844..10627462,2	K562	blood:
2	chr11:10625653..10628212-chr11:10643683..10646653,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1346022	1.00[ASN][1000 genomes]
rs16927077	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs35468145	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41464450	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7940646	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:10617600-10626800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:10617600-10627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:10620200-10635800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:10620400-10630000	Enhancers	Fetal Muscle Leg	muscle
7	chr11:10620400-10630200	Enhancers	Fetal Thymus	thymus
8	chr11:10621200-10627400	Weak transcription	Brain Anterior Caudate	brain
9	chr11:10622200-10627200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:10622400-10627400	Enhancers	Primary B cells from peripheral blood	blood
11	chr11:10622400-10629200	Strong transcription	Aorta	Aorta
12	chr11:10622600-10627400	Weak transcription	Fetal Kidney	kidney
13	chr11:10622800-10632800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:10623000-10629000	Weak transcription	Colonic Mucosa	Colon
15	chr11:10623400-10635400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:10623800-10627400	Weak transcription	K562	blood
17	chr11:10624800-10630000	Enhancers	Placenta Amnion	Placenta Amnion
18	chr11:10624800-10632800	Enhancers	Thymus	Thymus
19	chr11:10625000-10627000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr11:10625000-10627600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:10625000-10627600	Strong transcription	Brain Substantia Nigra	brain
22	chr11:10625000-10629200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:10625000-10629200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:10625000-10629800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:10625000-10631800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr11:10625200-10627000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr11:10625200-10630200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr11:10625200-10630200	Genic enhancers	Fetal Stomach	stomach
29	chr11:10625400-10626800	Enhancers	HSMM	muscle
30	chr11:10625400-10627000	Enhancers	Adipose Nuclei	Adipose
31	chr11:10625400-10629200	Flanking Active TSS	Primary B cells from cord blood	blood
32	chr11:10625400-10632000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr11:10625600-10626800	Enhancers	Primary T cells from cord blood	blood
34	chr11:10625600-10626800	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr11:10625600-10627400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:10625600-10628000	Enhancers	Osteobl	bone
37	chr11:10625600-10629400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:10625600-10629600	Enhancers	NHDF-Ad	bronchial
39	chr11:10625800-10628000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:10626000-10626800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:10626000-10627000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr11:10626000-10627400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:10626000-10627400	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr11:10626000-10627400	Weak transcription	NH-A	brain
45	chr11:10626000-10627600	Weak transcription	Fetal Heart	heart
46	chr11:10626000-10627600	Weak transcription	Fetal Intestine Small	intestine
47	chr11:10626000-10627600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr11:10626000-10627800	Enhancers	HUVEC	blood vessel
49	chr11:10626000-10628800	Weak transcription	Left Ventricle	heart
50	chr11:10626000-10629000	Weak transcription	Psoas Muscle	Psoas

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