Variant report

Variant	rs16927077
Chromosome Location	chr11:10620629-10620630
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10617278..10621445-chr11:10622664..10626512,4	K562	blood:
2	chr11:10601475..10602988-chr11:10620423..10622193,2	K562	blood:
3	chr11:10618512..10620959-chr11:10622664..10624993,2	K562	blood:
4	chr11:10618598..10620933-chr11:10630778..10632492,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1035691	1.00[JPT][hapmap]
rs10840457	1.00[JPT][hapmap]
rs11042902	1.00[JPT][hapmap]
rs11603178	1.00[JPT][hapmap]
rs1346022	1.00[ASN][1000 genomes]
rs1462940	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16908001	1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap]
rs17318955	1.00[JPT][hapmap]
rs17403175	1.00[CHD][hapmap]
rs17403439	1.00[JPT][hapmap]
rs17403460	1.00[JPT][hapmap]
rs17403795	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17403942	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17403977	1.00[JPT][hapmap]
rs1863243	1.00[JPT][hapmap]
rs1863244	1.00[JPT][hapmap]
rs1979367	1.00[JPT][hapmap]
rs2098839	1.00[JPT][hapmap]
rs35468145	1.00[ASN][1000 genomes]
rs4025	1.00[JPT][hapmap]
rs41464450	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4442541	1.00[JPT][hapmap]
rs4909945	1.00[JPT][hapmap]
rs4910160	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4910165	1.00[JPT][hapmap]
rs7119709	1.00[ASN][1000 genomes]
rs7940646	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs881869	1.00[JPT][hapmap]
rs903822	1.00[JPT][hapmap]
rs903823	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10592400-10622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:10597200-10625800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr11:10603600-10621800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:10605800-10622200	Weak transcription	Spleen	Spleen
7	chr11:10607400-10626000	Weak transcription	Fetal Lung	lung
8	chr11:10608800-10625400	Weak transcription	Adipose Nuclei	Adipose
9	chr11:10609600-10620800	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:10611600-10625000	Weak transcription	Brain Substantia Nigra	brain
11	chr11:10614000-10621200	Weak transcription	HSMMtube	muscle
12	chr11:10615000-10621000	Weak transcription	Fetal Kidney	kidney
13	chr11:10615000-10621200	Weak transcription	NHLF	lung
14	chr11:10615000-10625600	Weak transcription	Osteobl	bone
15	chr11:10615200-10625600	Weak transcription	NHDF-Ad	bronchial
16	chr11:10615800-10625600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:10616000-10620800	Weak transcription	Fetal Intestine Large	intestine
18	chr11:10616000-10621000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:10616000-10621400	Weak transcription	Fetal Intestine Small	intestine
20	chr11:10616000-10622200	Weak transcription	Esophagus	oesophagus
21	chr11:10616200-10621400	Weak transcription	Hela-S3	cervix
22	chr11:10616800-10625400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:10616800-10625400	Weak transcription	HMEC	breast
24	chr11:10617000-10621000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:10617400-10623400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:10617600-10626800	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr11:10617600-10627600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:10618400-10621600	Enhancers	Primary B cells from cord blood	blood
29	chr11:10618800-10620800	Strong transcription	Fetal Stomach	stomach
30	chr11:10618800-10621400	Enhancers	Primary hematopoietic stem cells	blood
31	chr11:10619200-10620800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:10619200-10625400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:10619400-10621000	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr11:10619600-10620800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:10619600-10620800	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr11:10619800-10620800	Weak transcription	Placenta	Placenta
37	chr11:10619800-10621000	Genic enhancers	Stomach Smooth Muscle	stomach
38	chr11:10619800-10622200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:10619800-10622600	Enhancers	HepG2	liver
40	chr11:10619800-10623200	Weak transcription	K562	blood
41	chr11:10620000-10621000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:10620000-10621000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr11:10620000-10621800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:10620000-10622600	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr11:10620000-10623200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:10620200-10635800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr11:10620400-10621000	Genic enhancers	Aorta	Aorta
48	chr11:10620400-10621200	Strong transcription	Brain Anterior Caudate	brain
49	chr11:10620400-10622200	Enhancers	Rectal Smooth Muscle	rectum
50	chr11:10620400-10622400	Genic enhancers	Colon Smooth Muscle	Colon

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