Variant report

Variant	rs11603178
Chromosome Location	chr11:10660067-10660068
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:10659980-10660130	HAc	cerebellar:	n/a	n/a
2	JUND	chr11:10659965-10660078	H1-hESC	embryonic stem cell:	n/a	n/a
3	REST	chr11:10659198-10660470	H1-neurons	neurons:	n/a	chr11:10659431-10659444 chr11:10659425-10659438 chr11:10659428-10659441
4	CTCF	chr11:10660020-10660170	HFF	foreskin:	n/a	n/a
5	NRF1	chr11:10659755-10660358	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
MRVI1	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1035691	1.00[JPT][hapmap]
rs10840457	1.00[JPT][hapmap]
rs11042902	1.00[JPT][hapmap]
rs1462940	1.00[JPT][hapmap]
rs16908001	1.00[JPT][hapmap]
rs16927077	1.00[JPT][hapmap]
rs17318955	1.00[JPT][hapmap]
rs17403439	1.00[JPT][hapmap]
rs17403460	1.00[JPT][hapmap]
rs17403795	1.00[JPT][hapmap]
rs17403942	1.00[JPT][hapmap]
rs17403977	1.00[JPT][hapmap]
rs1863243	1.00[JPT][hapmap]
rs1863244	1.00[JPT][hapmap]
rs1979367	1.00[JPT][hapmap]
rs2098839	1.00[JPT][hapmap]
rs4025	1.00[JPT][hapmap]
rs41464450	1.00[JPT][hapmap]
rs4442541	1.00[JPT][hapmap]
rs4909945	1.00[JPT][hapmap]
rs4910160	1.00[JPT][hapmap]
rs4910165	1.00[JPT][hapmap]
rs7940646	1.00[JPT][hapmap]
rs881869	1.00[JPT][hapmap]
rs903822	1.00[JPT][hapmap]
rs903823	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:10629600-10662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:10639800-10661600	Weak transcription	Gastric	stomach
4	chr11:10640600-10661400	Weak transcription	Left Ventricle	heart
5	chr11:10646000-10661600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
7	chr11:10646200-10661400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:10646800-10667600	Weak transcription	Right Atrium	heart
10	chr11:10648000-10661200	Weak transcription	Spleen	Spleen
11	chr11:10648000-10661400	Weak transcription	Adipose Nuclei	Adipose
12	chr11:10650400-10663400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:10650400-10678600	Weak transcription	Right Ventricle	heart
14	chr11:10651800-10670600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:10652400-10668200	Weak transcription	NHLF	lung
16	chr11:10653200-10668200	Weak transcription	Esophagus	oesophagus
17	chr11:10653600-10663600	Weak transcription	Lung	lung
18	chr11:10653600-10669000	Weak transcription	Fetal Intestine Small	intestine
19	chr11:10654400-10660800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:10655400-10661400	Weak transcription	Placenta	Placenta
21	chr11:10658400-10660400	Enhancers	Brain Hippocampus Middle	brain
22	chr11:10658400-10663800	Enhancers	Brain Anterior Caudate	brain
23	chr11:10658600-10661000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr11:10658600-10662400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:10658600-10662400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr11:10658600-10665000	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr11:10658800-10661400	Enhancers	Fetal Brain Male	brain
28	chr11:10658800-10662000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:10658800-10662400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:10658800-10676600	Enhancers	Primary B cells from peripheral blood	blood
31	chr11:10659000-10660400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr11:10659000-10661000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:10659000-10662000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:10659000-10664200	Enhancers	Fetal Muscle Leg	muscle
35	chr11:10659200-10660200	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr11:10659200-10660200	Genic enhancers	Stomach Smooth Muscle	stomach
37	chr11:10659200-10660400	Enhancers	Colonic Mucosa	Colon
38	chr11:10659200-10661200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr11:10659200-10661400	Enhancers	Fetal Brain Female	brain
40	chr11:10659200-10662000	Enhancers	Rectal Smooth Muscle	rectum
41	chr11:10659200-10663000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr11:10659400-10660600	Enhancers	Colon Smooth Muscle	Colon
43	chr11:10659600-10660400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:10659600-10660400	Enhancers	NH-A	brain
45	chr11:10659600-10660800	Weak transcription	GM12878-XiMat	blood
46	chr11:10659600-10661400	Weak transcription	Aorta	Aorta
47	chr11:10659600-10661400	Weak transcription	Brain Substantia Nigra	brain
48	chr11:10659600-10661600	Enhancers	Osteobl	bone
49	chr11:10659800-10660200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr11:10659800-10661200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast

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