Variant report

Variant	rs1035691
Chromosome Location	chr11:10658735-10658736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10840457	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11042902	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11603178	1.00[JPT][hapmap]
rs1462940	1.00[JPT][hapmap]
rs16908001	1.00[JPT][hapmap]
rs16927077	1.00[JPT][hapmap]
rs17318955	1.00[JPT][hapmap]
rs17403439	1.00[JPT][hapmap]
rs17403460	1.00[JPT][hapmap]
rs17403795	1.00[JPT][hapmap]
rs17403942	1.00[JPT][hapmap]
rs17403977	1.00[JPT][hapmap]
rs1863243	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1863244	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979367	1.00[JPT][hapmap]
rs2052690	0.87[ASN][1000 genomes]
rs2098839	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4025	1.00[JPT][hapmap]
rs41464450	1.00[JPT][hapmap]
rs4442541	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs4909945	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs4910160	1.00[JPT][hapmap]
rs4910165	1.00[JPT][hapmap]
rs7936267	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936275	0.87[ASN][1000 genomes]
rs7940646	1.00[JPT][hapmap]
rs881869	1.00[JPT][hapmap]
rs903822	1.00[JPT][hapmap]
rs903823	1.00[JPT][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1035691	RRAS2	cis	cerebellum	SCAN
rs1035691	STK33	cis	parietal	SCAN

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:10629600-10662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:10637800-10659200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:10639800-10661600	Weak transcription	Gastric	stomach
5	chr11:10640600-10661400	Weak transcription	Left Ventricle	heart
6	chr11:10644000-10659600	Weak transcription	Osteobl	bone
7	chr11:10646000-10661600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr11:10646000-10679000	Weak transcription	Fetal Lung	lung
9	chr11:10646200-10661400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr11:10646200-10679200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:10646400-10659400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:10646800-10667600	Weak transcription	Right Atrium	heart
13	chr11:10647200-10659000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:10647400-10659200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:10647400-10659200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:10648000-10659200	Weak transcription	Colonic Mucosa	Colon
17	chr11:10648000-10661200	Weak transcription	Spleen	Spleen
18	chr11:10648000-10661400	Weak transcription	Adipose Nuclei	Adipose
19	chr11:10648400-10659000	Weak transcription	Fetal Muscle Leg	muscle
20	chr11:10650400-10663400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:10650400-10678600	Weak transcription	Right Ventricle	heart
22	chr11:10651800-10670600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:10652400-10668200	Weak transcription	NHLF	lung
24	chr11:10653000-10658800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:10653200-10668200	Weak transcription	Esophagus	oesophagus
26	chr11:10653400-10658800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr11:10653600-10663600	Weak transcription	Lung	lung
28	chr11:10653600-10669000	Weak transcription	Fetal Intestine Small	intestine
29	chr11:10654400-10660800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:10654600-10658800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:10655200-10659800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr11:10655400-10659200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:10655400-10661400	Weak transcription	Placenta	Placenta
34	chr11:10655600-10659200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:10656600-10659200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr11:10657200-10659200	Strong transcription	Stomach Smooth Muscle	stomach
37	chr11:10657600-10659200	Strong transcription	Aorta	Aorta
38	chr11:10657600-10659400	Weak transcription	Ovary	ovary
39	chr11:10658000-10659600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:10658200-10659200	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:10658400-10660400	Enhancers	Brain Hippocampus Middle	brain
42	chr11:10658400-10663800	Enhancers	Brain Anterior Caudate	brain
43	chr11:10658600-10658800	Genic enhancers	Colon Smooth Muscle	Colon
44	chr11:10658600-10659800	Genic enhancers	Fetal Stomach	stomach
45	chr11:10658600-10661000	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr11:10658600-10662400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:10658600-10662400	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr11:10658600-10665000	Enhancers	Primary monocytes fromperipheralblood	blood

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