Variant report

Variant	rs41464450
Chromosome Location	chr11:10601522-10601523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10599184..10602109-chr11:10604361..10607201,2	K562	blood:
2	chr11:10601475..10602988-chr11:10620423..10622193,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1035691	1.00[JPT][hapmap]
rs10840457	1.00[JPT][hapmap]
rs11042902	1.00[JPT][hapmap]
rs11603178	1.00[JPT][hapmap]
rs1346022	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1364738	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1364739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1462940	0.80[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16908001	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs16927077	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17318955	1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs17403175	1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17403439	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17403460	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17403795	1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17403942	0.89[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17403977	0.89[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1863243	1.00[JPT][hapmap]
rs1863244	1.00[JPT][hapmap]
rs1979367	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2098839	1.00[JPT][hapmap]
rs35468145	1.00[ASN][1000 genomes]
rs4025	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4442541	1.00[JPT][hapmap]
rs4909945	1.00[JPT][hapmap]
rs4910160	1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4910161	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4910165	1.00[JPT][hapmap]
rs6484336	0.88[CEU][hapmap];0.94[GIH][hapmap];0.87[TSI][hapmap]
rs7119709	1.00[ASN][1000 genomes]
rs7940646	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7949992	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7950829	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7952446	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs881869	1.00[JPT][hapmap]
rs903822	1.00[JPT][hapmap]
rs903823	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10580600-10609800	Weak transcription	Thymus	Thymus
3	chr11:10583200-10601800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:10586400-10620400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:10587600-10605000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:10588600-10602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:10590600-10601600	Weak transcription	Adipose Nuclei	Adipose
8	chr11:10590600-10605600	Weak transcription	NH-A	brain
9	chr11:10590600-10611200	Weak transcription	Pancreas	Pancrea
10	chr11:10590800-10608200	Weak transcription	NHDF-Ad	bronchial
11	chr11:10591400-10603200	Weak transcription	Osteobl	bone
12	chr11:10592000-10602800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:10592000-10608000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:10592400-10622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr11:10592600-10601800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:10593400-10605000	Weak transcription	Gastric	stomach
17	chr11:10594000-10603600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:10594000-10605000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:10594400-10606000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:10595200-10601600	Weak transcription	Fetal Muscle Trunk	muscle
23	chr11:10595400-10615400	Weak transcription	Brain Angular Gyrus	brain
24	chr11:10595600-10603200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:10595800-10602600	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr11:10595800-10605200	Strong transcription	Aorta	Aorta
27	chr11:10595800-10608400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr11:10597200-10605600	Weak transcription	Colonic Mucosa	Colon
29	chr11:10597200-10625800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr11:10597800-10602800	Weak transcription	Right Atrium	heart
31	chr11:10597800-10602800	Weak transcription	HSMMtube	muscle
32	chr11:10598000-10602600	Weak transcription	Fetal Muscle Leg	muscle
33	chr11:10598000-10608200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:10598200-10602400	Weak transcription	Fetal Lung	lung
35	chr11:10598200-10605400	Weak transcription	Psoas Muscle	Psoas
36	chr11:10599000-10603200	Strong transcription	Ovary	ovary
37	chr11:10599000-10605800	Enhancers	Primary B cells from peripheral blood	blood
38	chr11:10599800-10601800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:10600000-10601800	Genic enhancers	Fetal Stomach	stomach
40	chr11:10600000-10602800	Enhancers	Primary B cells from cord blood	blood
41	chr11:10600000-10603200	Strong transcription	Fetal Intestine Large	intestine
42	chr11:10600000-10606000	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr11:10600200-10602200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
44	chr11:10600200-10603000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr11:10600200-10605000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:10600200-10606800	Enhancers	HUVEC	blood vessel
47	chr11:10600400-10601800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:10600400-10602800	Strong transcription	NHLF	lung
49	chr11:10600400-10605800	Genic enhancers	Stomach Smooth Muscle	stomach
50	chr11:10600400-10605800	Enhancers	Spleen	Spleen

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