Variant report

Variant	rs7119779
Chromosome Location	chr11:75508986-75508987
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75507089..75509212-chr11:75526344..75527964,2	K562	blood:
2	chr11:75427175..75429155-chr11:75507440..75509148,2	MCF-7	breast:
3	chr11:75505538..75510533-chr11:75511527..75514992,5	MCF-7	breast:
4	chr11:75507709..75509958-chr11:75524465..75526325,2	MCF-7	breast:
5	chr11:75507903..75509753-chr11:75522846..75525543,2	MCF-7	breast:
6	chr11:75498922..75500789-chr11:75508834..75510930,2	K562	blood:

Variant related genes	Relation type
ENSG00000198382	Chromatin interaction
ENSG00000254814	Chromatin interaction
ENSG00000255507	Chromatin interaction
ENSG00000166391	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs57784548	1.00[AMR][1000 genomes]
rs58245876	1.00[AMR][1000 genomes]
rs58725839	1.00[AMR][1000 genomes]
rs59635776	1.00[AMR][1000 genomes]
rs60032678	1.00[AMR][1000 genomes]
rs60841430	1.00[AMR][1000 genomes]
rs73489913	1.00[AMR][1000 genomes]
rs73489916	1.00[AMR][1000 genomes]
rs73489924	1.00[AMR][1000 genomes]
rs73489925	1.00[AMR][1000 genomes]
rs73504534	1.00[AMR][1000 genomes]
rs73504548	1.00[AMR][1000 genomes]
rs73504568	1.00[AMR][1000 genomes]
rs73504574	1.00[AMR][1000 genomes]
rs73504580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504581	1.00[AMR][1000 genomes]
rs73504584	1.00[AMR][1000 genomes]
rs73504586	1.00[AMR][1000 genomes]
rs73504588	1.00[AMR][1000 genomes]
rs73504598	1.00[AMR][1000 genomes]
rs73506507	1.00[AMR][1000 genomes]
rs73506509	1.00[AMR][1000 genomes]
rs73506510	1.00[AMR][1000 genomes]
rs73506512	1.00[AMR][1000 genomes]
rs7927703	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75495000-75511200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:75495400-75512000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr11:75496200-75514800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr11:75496800-75514400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:75497600-75509400	Weak transcription	Primary B cells from cord blood	blood
6	chr11:75497800-75514200	Weak transcription	Gastric	stomach
7	chr11:75498800-75511600	Weak transcription	Stomach Mucosa	stomach
8	chr11:75499000-75512000	Weak transcription	Lung	lung
9	chr11:75501800-75513200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:75502400-75511200	Weak transcription	Esophagus	oesophagus
11	chr11:75503400-75509800	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:75504400-75512000	Weak transcription	Right Atrium	heart
13	chr11:75504800-75510200	Weak transcription	Fetal Thymus	thymus
14	chr11:75505000-75512200	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:75505600-75509600	Weak transcription	Fetal Heart	heart
16	chr11:75506200-75511400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr11:75506400-75509000	Enhancers	HMEC	breast
18	chr11:75506400-75509400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:75506400-75509400	Enhancers	NHEK	skin
20	chr11:75506400-75514600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:75506800-75509800	Strong transcription	Fetal Stomach	stomach
22	chr11:75507000-75509000	Weak transcription	Brain Anterior Caudate	brain
23	chr11:75507000-75509600	Strong transcription	Spleen	Spleen
24	chr11:75507400-75509000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:75507400-75509600	Genic enhancers	HepG2	liver
26	chr11:75507400-75511400	Weak transcription	Brain Cingulate Gyrus	brain
27	chr11:75507400-75512000	Weak transcription	Right Ventricle	heart
28	chr11:75507400-75512000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:75507400-75512200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:75507600-75509800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:75507600-75512000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr11:75507600-75512200	Strong transcription	Adipose Nuclei	Adipose
33	chr11:75507800-75509400	Weak transcription	Pancreas	Pancrea
34	chr11:75507800-75511600	Weak transcription	Brain Angular Gyrus	brain
35	chr11:75508000-75509200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:75508000-75509600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:75508000-75514400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr11:75508200-75509000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr11:75508200-75509200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:75508200-75509600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:75508200-75514400	Strong transcription	Fetal Intestine Small	intestine
42	chr11:75508400-75509200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:75508400-75509200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:75508400-75509200	Enhancers	HUVEC	blood vessel
45	chr11:75508400-75509600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:75508400-75511200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:75508400-75513000	Strong transcription	Liver	Liver
48	chr11:75508600-75509000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:75508600-75509200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr11:75508600-75509200	Weak transcription	Primary B cells from peripheral blood	blood

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