Variant report

Variant	rs73504588
Chromosome Location	chr11:75504310-75504311
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr11:75504084-75504380	HepG2	liver:	n/a	n/a
2	CHD2	chr11:75504145-75504345	HepG2	liver:	n/a	n/a
3	FOXA1	chr11:75503934-75504490	HepG2	liver:	n/a	n/a
4	SMC3	chr11:75503892-75504327	HepG2	liver:	n/a	n/a
5	FOXA2	chr11:75504060-75504405	HepG2	liver:	n/a	n/a
6	FOXA1	chr11:75503999-75504351	HepG2	liver:	n/a	n/a
7	ARID3A	chr11:75504047-75504381	HepG2	liver:	n/a	n/a
8	FOXA1	chr11:75503969-75504391	HepG2	liver:	n/a	n/a
9	TEAD4	chr11:75503851-75504360	HepG2	liver:	n/a	chr11:75504135-75504144
10	EP300	chr11:75504111-75504311	HepG2	liver:	n/a	n/a
11	MAX	chr11:75503912-75504506	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
DGAT2	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs57784548	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58245876	1.00[AMR][1000 genomes]
rs58725839	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59635776	1.00[AMR][1000 genomes]
rs60032678	1.00[AMR][1000 genomes]
rs60841430	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7119779	1.00[AMR][1000 genomes]
rs73489913	1.00[AMR][1000 genomes]
rs73489916	1.00[AMR][1000 genomes]
rs73489924	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489925	1.00[AMR][1000 genomes]
rs73504534	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504548	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504568	1.00[AMR][1000 genomes]
rs73504574	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504580	1.00[AMR][1000 genomes]
rs73504581	1.00[AMR][1000 genomes]
rs73504584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504586	1.00[AMR][1000 genomes]
rs73504598	1.00[AMR][1000 genomes]
rs73506507	1.00[AMR][1000 genomes]
rs73506509	1.00[AMR][1000 genomes]
rs73506510	1.00[AMR][1000 genomes]
rs73506512	1.00[AMR][1000 genomes]
rs7927703	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75481000-75506600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:75489200-75508200	Weak transcription	GM12878-XiMat	blood
3	chr11:75490800-75504600	Weak transcription	Fetal Stomach	stomach
4	chr11:75493000-75504400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:75495000-75511200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:75495400-75506400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:75495400-75512000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr11:75495800-75505400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr11:75496200-75514800	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:75496800-75514400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:75497600-75509400	Weak transcription	Primary B cells from cord blood	blood
12	chr11:75497800-75508200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:75497800-75514200	Weak transcription	Gastric	stomach
14	chr11:75498000-75507600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr11:75498800-75505200	Strong transcription	Fetal Intestine Large	intestine
16	chr11:75498800-75506600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:75498800-75511600	Weak transcription	Stomach Mucosa	stomach
18	chr11:75499000-75512000	Weak transcription	Lung	lung
19	chr11:75499200-75506400	Strong transcription	Fetal Intestine Small	intestine
20	chr11:75499200-75507600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:75500600-75505000	Genic enhancers	Adipose Nuclei	Adipose
22	chr11:75501400-75507000	Weak transcription	Spleen	Spleen
23	chr11:75501800-75513200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr11:75502200-75505200	Genic enhancers	HepG2	liver
25	chr11:75502400-75511200	Weak transcription	Esophagus	oesophagus
26	chr11:75502600-75506400	Weak transcription	NHEK	skin
27	chr11:75503200-75504600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:75503200-75505800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr11:75503400-75505400	Enhancers	Left Ventricle	heart
30	chr11:75503400-75509800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr11:75503600-75504800	Enhancers	Right Ventricle	heart
32	chr11:75503600-75505400	Enhancers	Pancreas	Pancrea
33	chr11:75503600-75505600	Enhancers	Fetal Heart	heart
34	chr11:75503800-75504400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:75503800-75504800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr11:75503800-75505400	Enhancers	Fetal Brain Female	brain
37	chr11:75503800-75507600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:75504000-75504400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr11:75504000-75504400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:75504000-75504400	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr11:75504000-75504400	Enhancers	Right Atrium	heart
42	chr11:75504000-75504600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:75504000-75504800	Enhancers	HMEC	breast
44	chr11:75504200-75507200	Enhancers	Liver	Liver

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