Variant report

Variant	rs73504598
Chromosome Location	chr11:75513304-75513305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75511055..75516378-chr11:75524946..75527964,8	MCF-7	breast:
2	chr11:75512671..75516260-chr11:75524397..75526274,3	MCF-7	breast:
3	chr11:75478711..75481665-chr11:75512333..75514833,3	MCF-7	breast:
4	chr11:75510740..75513614-chr11:75516273..75518633,2	MCF-7	breast:
5	chr11:75505538..75510533-chr11:75511527..75514992,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255507	Chromatin interaction
ENSG00000062282	Chromatin interaction
ENSG00000247867	Chromatin interaction
ENSG00000198382	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs57784548	1.00[AMR][1000 genomes]
rs58245876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58725839	1.00[AMR][1000 genomes]
rs59635776	1.00[AMR][1000 genomes]
rs60032678	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60841430	1.00[AMR][1000 genomes]
rs7119779	1.00[AMR][1000 genomes]
rs73489913	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489916	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73489924	1.00[AMR][1000 genomes]
rs73489925	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504534	1.00[AMR][1000 genomes]
rs73504548	1.00[AMR][1000 genomes]
rs73504568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504574	1.00[AMR][1000 genomes]
rs73504580	1.00[AMR][1000 genomes]
rs73504581	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504584	1.00[AMR][1000 genomes]
rs73504586	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73504588	1.00[AMR][1000 genomes]
rs73506507	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506509	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506510	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73506512	1.00[AMR][1000 genomes]
rs7927703	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897924	chr11:75424546-75678647	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv897925	chr11:75456134-75556323	Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75496200-75514800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr11:75496800-75514400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:75497800-75514200	Weak transcription	Gastric	stomach
4	chr11:75506400-75514600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:75508000-75514400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:75508200-75514400	Strong transcription	Fetal Intestine Small	intestine
7	chr11:75509000-75525200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:75509200-75513800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:75509200-75515600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:75509800-75525000	Weak transcription	Fetal Stomach	stomach
11	chr11:75510800-75514400	Enhancers	Fetal Thymus	thymus
12	chr11:75511000-75514800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr11:75511200-75514000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:75511600-75515000	Enhancers	Brain Substantia Nigra	brain
15	chr11:75511800-75513600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:75511800-75513800	Enhancers	Thymus	Thymus
17	chr11:75511800-75514400	Enhancers	Placenta	Placenta
18	chr11:75511800-75514800	Enhancers	Brain Anterior Caudate	brain
19	chr11:75511800-75514800	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr11:75512000-75513400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr11:75512000-75513400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:75512000-75514400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr11:75512000-75514400	Enhancers	Primary T cells fromperipheralblood	blood
24	chr11:75512000-75514400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:75512000-75514400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr11:75512000-75514400	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr11:75512000-75518600	Weak transcription	Stomach Mucosa	stomach
28	chr11:75512200-75513400	Enhancers	Primary T cells from cord blood	blood
29	chr11:75512200-75513400	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr11:75512200-75513800	Enhancers	Fetal Muscle Leg	muscle
31	chr11:75512200-75514200	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr11:75512200-75514400	Genic enhancers	Adipose Nuclei	Adipose
33	chr11:75512200-75514400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr11:75512200-75514800	Enhancers	Brain Cingulate Gyrus	brain
35	chr11:75512200-75521800	Weak transcription	Lung	lung
36	chr11:75512400-75513600	Enhancers	Fetal Muscle Trunk	muscle
37	chr11:75512400-75514200	Weak transcription	Brain Angular Gyrus	brain
38	chr11:75512400-75514400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:75512600-75513400	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr11:75512600-75513400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr11:75512600-75514200	Enhancers	Spleen	Spleen
42	chr11:75512800-75523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:75512800-75525000	Weak transcription	Esophagus	oesophagus
44	chr11:75513000-75514000	Weak transcription	Liver	Liver
45	chr11:75513000-75514200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:75513000-75514400	Weak transcription	Right Ventricle	heart
47	chr11:75513000-75517000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:75513000-75521400	Weak transcription	Duodenum Mucosa	Duodenum
49	chr11:75513000-75525200	Weak transcription	Fetal Intestine Large	intestine
50	chr11:75513200-75513400	Enhancers	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links