Variant report

Variant	rs7126260
Chromosome Location	chr11:75162688-75162689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:75162592-75162814	MCF-7	breast:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
2	CTCF	chr11:75162660-75162810	HMF	breast:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
3	CTCF	chr11:75162680-75162830	AG04450	lung:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
4	CTCF	chr11:75162640-75162790	BJ	skin:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
5	MXI1	chr11:75162440-75162793	H1-hESC	embryonic stem cell:	n/a	n/a
6	RAD21	chr11:75162487-75162946	A549	lung:	n/a	chr11:75162693-75162707 chr11:75162689-75162708
7	CTCF	chr11:75162620-75162770	GM12865	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
8	CTCF	chr11:75162640-75162790	HCFaa	heart:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
9	ZNF143	chr11:75162543-75162884	K562	blood:	n/a	n/a
10	CTCF	chr11:75162605-75162835	GM10266	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
11	CTCF	chr11:75162640-75162790	Caco-2	colon:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
12	CTCF	chr11:75162595-75162824	GM13977	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
13	CTCF	chr11:75162560-75162841	Hela-S3	cervix:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
14	CTCF	chr11:75162580-75162730	GM12865	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
15	CTCF	chr11:75162620-75162770	A549	lung:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
16	CTCF	chr11:75162640-75162790	HEK293	kidney:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
17	CTCF	chr11:75162620-75162770	HBMEC	blood vessel:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
18	CTCF	chr11:75162603-75162786	LNCaP	prostate:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
19	CTCF	chr11:75162625-75162797	GM13976	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
20	CTCF	chr11:75162640-75162790	HepG2	liver:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
21	CTCF	chr11:75162640-75162790	RPTEC	kidney:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
22	CTCF	chr11:75162502-75162940	K562	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
23	CTCF	chr11:75162640-75162790	HBMEC	blood vessel:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
24	CTCF	chr11:75162640-75162790	K562	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
25	CTCF	chr11:75162596-75162840	Medullo	brain:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
26	RCOR1	chr11:75162668-75162791	K562	blood:	n/a	n/a
27	CTCF	chr11:75162553-75162832	NHEK	skin:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
28	CTCF	chr11:75162640-75162790	GM06990	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
29	POLR2A	chr11:75162506-75162718	K562	blood:	n/a	n/a
30	HMGN3	chr11:75162300-75162776	K562	blood:	n/a	n/a
31	TCF12	chr11:75162567-75162775	H1-hESC	embryonic stem cell:	n/a	chr11:75162617-75162627
32	CTCF	chr11:75162640-75162790	GM12874	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
33	TBL1XR1	chr11:75162545-75162816	K562	blood:	n/a	n/a
34	CTCF	chr11:75162660-75162810	GM12865	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
35	RAD21	chr11:75162534-75162868	IMR90	lung:	n/a	chr11:75162693-75162707 chr11:75162689-75162708
36	CTCF	chr11:75162640-75162790	HRE	kidney:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
37	CTCF	chr11:75162599-75162805	A549	lung:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
38	CTCF	chr11:75162610-75162805	MCF-7	breast:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
39	CTCF	chr11:75162580-75162730	WI-38	lung:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
40	CTCF	chr11:75162580-75162730	GM06990	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
41	CTCF	chr11:75162618-75162784	GM20000	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
42	CTCF	chr11:75162573-75162813	MCF-7	breast:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
43	CTCF	chr11:75162680-75162830	AG10803	skin:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
44	CTCF	chr11:75162640-75162790	HCPEpiC	choroid plexus:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
45	CTCF	chr11:75162660-75162810	MCF-7	breast:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
46	CTCF	chr11:75162581-75162797	GM19239	blood:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
47	ZNF143	chr11:75162450-75162871	H1-hESC	embryonic stem cell:	n/a	n/a
48	CTCF	chr11:75162554-75162785	T-47D	breast:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
49	CTCF	chr11:75162660-75162810	HRE	kidney:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708
50	CTCF	chr11:75162680-75162830	BE2_C	brain:	n/a	chr11:75162691-75162709 chr11:75162686-75162707 chr11:75162693-75162706 chr11:75162692-75162708

No.	Distal block	Cell Line	Cell type
1	chr11:75161733..75162837-chr11:75243177..75244003,4	MCF-7	breast:
2	chr11:74991226..74991750-chr11:75162225..75163031,2	MCF-7	breast:
3	chr11:75109851..75112831-chr11:75160838..75163878,3	MCF-7	breast:
4	chr11:75153115..75155939-chr11:75160007..75164426,4	MCF-7	breast:
5	chr11:75118896..75119444-chr11:75162241..75162788,2	MCF-7	breast:
6	chr11:75160860..75162731-chr11:75218934..75220538,2	K562	blood:
7	chr11:75099497..75100327-chr11:75162666..75163351,2	K562	blood:
8	chr11:75162095..75164647-chr11:75235506..75237767,3	MCF-7	breast:

Variant related genes	Relation type
GDPD5	TF binding region
ENSG00000158555	Chromatin interaction
ENSG00000206941	Chromatin interaction
ENSG00000149273	Chromatin interaction
ENSG00000254460	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17133983	1.00[AMR][1000 genomes]
rs7116029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7116757	1.00[AMR][1000 genomes]
rs73494875	1.00[AMR][1000 genomes]
rs73494876	1.00[AMR][1000 genomes]
rs73494878	1.00[AMR][1000 genomes]
rs73494879	1.00[AMR][1000 genomes]
rs7933166	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
4	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75141800-75165400	Weak transcription	Right Atrium	heart
2	chr11:75142000-75165200	Weak transcription	Ovary	ovary
3	chr11:75144200-75164800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:75144200-75165400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:75144200-75186600	Weak transcription	Gastric	stomach
6	chr11:75144400-75179800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:75144600-75174000	Weak transcription	Liver	Liver
8	chr11:75145000-75167800	Strong transcription	Placenta	Placenta
9	chr11:75145200-75165200	Weak transcription	A549	lung
10	chr11:75145200-75186200	Weak transcription	Primary T cells from cord blood	blood
11	chr11:75145200-75186400	Strong transcription	Fetal Intestine Small	intestine
12	chr11:75146400-75163200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:75146400-75173000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:75147800-75186000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr11:75148000-75163800	Weak transcription	Lung	lung
16	chr11:75148200-75186000	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:75150400-75172600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:75153000-75162800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr11:75153400-75168000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:75153600-75167200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:75153800-75176600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:75154400-75165400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:75154400-75165400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:75159000-75164400	Strong transcription	HSMMtube	muscle
25	chr11:75159000-75172800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:75160600-75167200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:75160600-75173000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr11:75161600-75162800	Weak transcription	Adipose Nuclei	Adipose
29	chr11:75161600-75166200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:75161600-75176600	Weak transcription	Right Ventricle	heart
31	chr11:75162000-75162800	ZNF genes & repeats	Spleen	Spleen
32	chr11:75162200-75164400	Strong transcription	HepG2	liver
33	chr11:75162200-75171800	Weak transcription	NHDF-Ad	bronchial
34	chr11:75162400-75162800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
35	chr11:75162400-75162800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:75162400-75162800	ZNF genes & repeats	Fetal Intestine Large	intestine
37	chr11:75162600-75162800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:75162600-75162800	Bivalent Enhancer	Brain Germinal Matrix	brain
39	chr11:75162600-75162800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr11:75162600-75163600	Weak transcription	Pancreas	Pancrea
41	chr11:75162600-75164800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:75162600-75165200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr11:75162600-75166200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:75162600-75166800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:75162600-75172400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links