Variant report

Variant	rs73494875
Chromosome Location	chr11:75175180-75175181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75174119..75176488-chr11:75293787..75295886,2	MCF-7	breast:
2	chr11:75172761..75175678-chr11:75175909..75177815,2	MCF-7	breast:
3	chr11:75164200..75167156-chr11:75173747..75176083,2	MCF-7	breast:
4	chr11:75173375..75176105-chr11:75178046..75180921,2	MCF-7	breast:
5	chr11:75174189..75176597-chr11:75211783..75214629,2	MCF-7	breast:
6	chr11:75168335..75170323-chr11:75172827..75175510,2	K562	blood:
7	chr11:75171275..75173319-chr11:75174538..75177396,2	K562	blood:

Variant related genes	Relation type
ENSG00000255326	Chromatin interaction
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11236443	1.00[EUR][1000 genomes]
rs17133983	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58745525	1.00[EUR][1000 genomes]
rs59219139	1.00[EUR][1000 genomes]
rs7116029	1.00[AMR][1000 genomes]
rs7116757	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7126260	1.00[AMR][1000 genomes]
rs73494841	1.00[EUR][1000 genomes]
rs73494855	1.00[EUR][1000 genomes]
rs73494859	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73494864	1.00[EUR][1000 genomes]
rs73494869	1.00[EUR][1000 genomes]
rs73494876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494881	1.00[EUR][1000 genomes]
rs73497013	1.00[EUR][1000 genomes]
rs7933166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
3	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75144200-75186600	Weak transcription	Gastric	stomach
2	chr11:75144400-75179800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:75145200-75186200	Weak transcription	Primary T cells from cord blood	blood
4	chr11:75145200-75186400	Strong transcription	Fetal Intestine Small	intestine
5	chr11:75147800-75186000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:75148200-75186000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:75153800-75176600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:75161600-75176600	Weak transcription	Right Ventricle	heart
9	chr11:75162800-75185000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr11:75163800-75186200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr11:75165200-75187000	Strong transcription	HepG2	liver
12	chr11:75165400-75175400	Strong transcription	Fetal Intestine Large	intestine
13	chr11:75165800-75178000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr11:75166200-75176800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:75166400-75178200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:75166600-75186800	Weak transcription	Pancreas	Pancrea
17	chr11:75167400-75180400	Weak transcription	Aorta	Aorta
18	chr11:75168200-75177200	Weak transcription	Fetal Stomach	stomach
19	chr11:75168400-75183400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:75169200-75177400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:75172000-75175200	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr11:75172000-75184400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr11:75172200-75175800	Enhancers	Fetal Muscle Trunk	muscle
24	chr11:75172200-75176800	Weak transcription	Fetal Brain Female	brain
25	chr11:75172200-75184400	Enhancers	Spleen	Spleen
26	chr11:75172400-75175200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr11:75172400-75176200	Weak transcription	HSMMtube	muscle
28	chr11:75172400-75179400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:75172400-75183200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:75172600-75180400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:75172800-75175200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr11:75173000-75175200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:75173000-75181200	Enhancers	HUVEC	blood vessel
34	chr11:75173400-75185000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:75173600-75176200	Enhancers	Placenta	Placenta
36	chr11:75173600-75176800	Weak transcription	NH-A	brain
37	chr11:75173600-75185800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr11:75174000-75175200	Enhancers	Fetal Muscle Leg	muscle
39	chr11:75174000-75175200	Enhancers	Lung	lung
40	chr11:75174200-75176800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:75174200-75179400	Weak transcription	Liver	Liver
42	chr11:75174200-75180000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr11:75174400-75175200	Enhancers	Adipose Nuclei	Adipose
44	chr11:75174400-75176800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr11:75174400-75177000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr11:75174400-75177400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr11:75174600-75176600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr11:75174600-75176800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:75174600-75176800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:75174600-75177000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links