Variant report

Variant	rs7116757
Chromosome Location	chr11:75179732-75179733
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75112364..75115138-chr11:75178491..75181185,2	K562	blood:
2	chr11:75173375..75176105-chr11:75178046..75180921,2	MCF-7	breast:
3	chr11:75179585..75185021-chr11:75186117..75188825,5	K562	blood:
4	chr11:75109644..75112014-chr11:75177550..75180122,2	MCF-7	breast:
5	chr11:75109241..75111992-chr11:75179238..75181170,2	K562	blood:

Variant related genes	Relation type
ENSG00000206941	Chromatin interaction
ENSG00000149273	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11236443	1.00[EUR][1000 genomes]
rs17133983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58745525	1.00[EUR][1000 genomes]
rs59219139	1.00[EUR][1000 genomes]
rs7116029	1.00[AMR][1000 genomes]
rs7126260	1.00[AMR][1000 genomes]
rs73494841	1.00[EUR][1000 genomes]
rs73494855	1.00[EUR][1000 genomes]
rs73494859	1.00[EUR][1000 genomes]
rs73494864	1.00[EUR][1000 genomes]
rs73494869	1.00[EUR][1000 genomes]
rs73494875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494881	1.00[EUR][1000 genomes]
rs73497013	1.00[EUR][1000 genomes]
rs7933166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
3	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	esv993847	chr11:75176894-75187181	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75144200-75186600	Weak transcription	Gastric	stomach
2	chr11:75144400-75179800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:75145200-75186200	Weak transcription	Primary T cells from cord blood	blood
4	chr11:75145200-75186400	Strong transcription	Fetal Intestine Small	intestine
5	chr11:75147800-75186000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:75148200-75186000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:75162800-75185000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:75163800-75186200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:75165200-75187000	Strong transcription	HepG2	liver
10	chr11:75166600-75186800	Weak transcription	Pancreas	Pancrea
11	chr11:75167400-75180400	Weak transcription	Aorta	Aorta
12	chr11:75168400-75183400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:75172000-75184400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr11:75172200-75184400	Enhancers	Spleen	Spleen
15	chr11:75172400-75183200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr11:75172600-75180400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:75173000-75181200	Enhancers	HUVEC	blood vessel
18	chr11:75173400-75185000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr11:75173600-75185800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr11:75174200-75180000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr11:75174600-75186600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:75175000-75179800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:75175600-75184000	Enhancers	Fetal Muscle Leg	muscle
24	chr11:75176200-75181000	Genic enhancers	Placenta	Placenta
25	chr11:75176200-75184600	Enhancers	HSMMtube	muscle
26	chr11:75176600-75180600	Enhancers	Lung	lung
27	chr11:75176600-75180600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:75176800-75180400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:75176800-75180800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:75177200-75181000	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr11:75177400-75180200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr11:75177400-75186800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr11:75177600-75180200	Weak transcription	Esophagus	oesophagus
34	chr11:75177800-75180600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr11:75177800-75182600	Weak transcription	HMEC	breast
36	chr11:75178000-75180200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr11:75178200-75180200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr11:75178400-75179800	Bivalent Enhancer	Fetal Stomach	stomach
39	chr11:75178400-75180600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr11:75178400-75180800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr11:75178600-75180600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:75178600-75182000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:75178600-75185800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr11:75178800-75180400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr11:75179000-75181400	Enhancers	Fetal Brain Male	brain
46	chr11:75179200-75180000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:75179200-75180200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:75179200-75180400	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr11:75179200-75180400	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr11:75179200-75180400	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links