Variant report

Variant	rs73494841
Chromosome Location	chr11:75158792-75158793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75133120..75135627-chr11:75156847..75159268,2	K562	blood:
2	chr11:75150672..75153470-chr11:75157167..75159123,2	K562	blood:
3	chr11:75108774..75112522-chr11:75157873..75162369,8	K562	blood:
4	chr11:75157046..75159946-chr11:75245100..75246665,2	K562	blood:
5	chr11:75156609..75158880-chr11:75228671..75231631,2	MCF-7	breast:
6	chr11:75132815..75134620-chr11:75156705..75159268,2	K562	blood:
7	chr11:75157365..75160107-chr11:75235912..75239181,4	MCF-7	breast:
8	chr11:75157548..75159982-chr11:75241722..75243630,2	K562	blood:
9	chr11:75147262..75148920-chr11:75157020..75159435,2	K562	blood:
10	chr11:75109278..75112345-chr11:75158089..75162369,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000206941	Chromatin interaction
ENSG00000149273	Chromatin interaction
ENSG00000158555	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11236443	1.00[EUR][1000 genomes]
rs17133983	1.00[EUR][1000 genomes]
rs58745525	1.00[EUR][1000 genomes]
rs59219139	1.00[EUR][1000 genomes]
rs7116757	1.00[EUR][1000 genomes]
rs73494855	1.00[EUR][1000 genomes]
rs73494859	1.00[EUR][1000 genomes]
rs73494864	1.00[EUR][1000 genomes]
rs73494869	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73494875	1.00[EUR][1000 genomes]
rs73494876	1.00[EUR][1000 genomes]
rs73494878	1.00[EUR][1000 genomes]
rs73494879	1.00[EUR][1000 genomes]
rs73494881	1.00[EUR][1000 genomes]
rs73497013	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7933166	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
4	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75141800-75165400	Weak transcription	Right Atrium	heart
2	chr11:75142000-75165200	Weak transcription	Ovary	ovary
3	chr11:75144200-75164800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:75144200-75165400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:75144200-75186600	Weak transcription	Gastric	stomach
6	chr11:75144400-75179800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:75144600-75174000	Weak transcription	Liver	Liver
8	chr11:75145000-75162400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:75145000-75167800	Strong transcription	Placenta	Placenta
10	chr11:75145200-75165200	Weak transcription	A549	lung
11	chr11:75145200-75186200	Weak transcription	Primary T cells from cord blood	blood
12	chr11:75145200-75186400	Strong transcription	Fetal Intestine Small	intestine
13	chr11:75146400-75163200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:75146400-75173000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:75147800-75186000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr11:75148000-75163800	Weak transcription	Lung	lung
17	chr11:75148200-75186000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:75150400-75172600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:75151400-75158800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr11:75152800-75159400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:75152800-75161600	Weak transcription	Pancreas	Pancrea
22	chr11:75153000-75161200	Weak transcription	Right Ventricle	heart
23	chr11:75153000-75162200	Weak transcription	HepG2	liver
24	chr11:75153000-75162800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr11:75153400-75168000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:75153600-75167200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:75153800-75176600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:75154400-75159000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:75154400-75160200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:75154400-75165400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr11:75154400-75165400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr11:75155400-75158800	Weak transcription	Adipose Nuclei	Adipose
33	chr11:75155600-75159000	Weak transcription	HSMMtube	muscle
34	chr11:75156000-75158800	Weak transcription	Spleen	Spleen
35	chr11:75156200-75158800	Weak transcription	Fetal Intestine Large	intestine
36	chr11:75156800-75161200	Weak transcription	Esophagus	oesophagus

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