Variant report

Variant	rs59219139
Chromosome Location	chr11:75169359-75169360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75168129..75170217-chr11:75271905..75274852,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149257	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11236443	1.00[EUR][1000 genomes]
rs17133983	1.00[EUR][1000 genomes]
rs58745525	1.00[EUR][1000 genomes]
rs7116757	1.00[EUR][1000 genomes]
rs73494841	1.00[EUR][1000 genomes]
rs73494855	1.00[EUR][1000 genomes]
rs73494859	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73494864	1.00[EUR][1000 genomes]
rs73494869	1.00[EUR][1000 genomes]
rs73494875	1.00[EUR][1000 genomes]
rs73494876	1.00[EUR][1000 genomes]
rs73494878	1.00[EUR][1000 genomes]
rs73494879	1.00[EUR][1000 genomes]
rs73494881	1.00[EUR][1000 genomes]
rs73497013	1.00[EUR][1000 genomes]
rs7933166	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041640	chr11:74945824-75174688	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	94 gene(s)	inside rSNPs	diseases
2	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
4	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75144200-75186600	Weak transcription	Gastric	stomach
2	chr11:75144400-75179800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:75144600-75174000	Weak transcription	Liver	Liver
4	chr11:75145200-75186200	Weak transcription	Primary T cells from cord blood	blood
5	chr11:75145200-75186400	Strong transcription	Fetal Intestine Small	intestine
6	chr11:75146400-75173000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:75147800-75186000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:75148200-75186000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:75150400-75172600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:75153800-75176600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr11:75159000-75172800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:75160600-75173000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:75161600-75176600	Weak transcription	Right Ventricle	heart
14	chr11:75162200-75171800	Weak transcription	NHDF-Ad	bronchial
15	chr11:75162600-75172400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:75162800-75185000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr11:75163800-75186200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:75164000-75174000	Weak transcription	Lung	lung
19	chr11:75165200-75187000	Strong transcription	HepG2	liver
20	chr11:75165400-75175400	Strong transcription	Fetal Intestine Large	intestine
21	chr11:75165800-75178000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr11:75166200-75176800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:75166400-75169400	Strong transcription	HSMMtube	muscle
24	chr11:75166400-75178200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:75166600-75173000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr11:75166600-75186800	Weak transcription	Pancreas	Pancrea
27	chr11:75166800-75172200	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:75166800-75174400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:75167000-75172000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:75167200-75171400	Weak transcription	Fetal Brain Female	brain
31	chr11:75167400-75180400	Weak transcription	Aorta	Aorta
32	chr11:75168000-75171600	Weak transcription	Spleen	Spleen
33	chr11:75168000-75173000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:75168200-75169400	Strong transcription	Placenta	Placenta
35	chr11:75168200-75172800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:75168200-75177200	Weak transcription	Fetal Stomach	stomach
37	chr11:75168400-75172600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:75168400-75183400	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:75168600-75170000	Strong transcription	Adipose Nuclei	Adipose
40	chr11:75168800-75169400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:75168800-75171000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:75168800-75173400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:75169200-75171800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr11:75169200-75177400	Weak transcription	Stomach Smooth Muscle	stomach

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