Variant report

Variant	rs7127739
Chromosome Location	chr11:23699123-23699124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LUZP2-5	chr11:23697639-23701053	NONHSAT018424

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10741990	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10741991	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10767103	0.81[EUR][1000 genomes]
rs10767104	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10767105	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10767106	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10834168	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834169	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10834170	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10834174	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11027433	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11027442	0.80[EUR][1000 genomes]
rs11027444	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12274304	1.00[ASN][1000 genomes]
rs12279140	1.00[ASN][1000 genomes]
rs12290625	1.00[ASN][1000 genomes]
rs12293404	0.86[ASN][1000 genomes]
rs12293501	0.86[ASN][1000 genomes]
rs12362229	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12420301	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420576	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12809000	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4334010	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4403804	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4491216	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4630297	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4922664	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923120	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4923121	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs57379916	1.00[ASN][1000 genomes]
rs6483977	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6483979	0.80[EUR][1000 genomes]
rs7122808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127586	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73435841	0.86[ASN][1000 genomes]
rs7924562	0.81[EUR][1000 genomes]
rs7928951	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv469942	chr11:23677246-23723766	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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