Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LUZP2-5	chr11:23697639-23701053	NONHSAT018424

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10741989	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10741991	0.80[EUR][1000 genomes]
rs10767107	0.83[EUR][1000 genomes]
rs10767108	0.83[EUR][1000 genomes]
rs10834167	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10834169	0.81[EUR][1000 genomes]
rs10834170	0.80[EUR][1000 genomes]
rs10834174	0.80[EUR][1000 genomes]
rs11027433	0.80[EUR][1000 genomes]
rs11027442	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11027447	0.82[EUR][1000 genomes]
rs12420301	0.80[EUR][1000 genomes]
rs12420576	0.80[EUR][1000 genomes]
rs4244504	0.83[EUR][1000 genomes]
rs4620716	0.81[EUR][1000 genomes]
rs4922665	0.81[EUR][1000 genomes]
rs4923121	0.80[EUR][1000 genomes]
rs6483977	0.80[EUR][1000 genomes]
rs6483978	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6483979	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7101422	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7122808	0.80[EUR][1000 genomes]
rs7123134	0.81[EUR][1000 genomes]
rs7127586	0.81[EUR][1000 genomes]
rs7127739	0.81[EUR][1000 genomes]
rs72873434	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7924562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv469942	chr11:23677246-23723766	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23699800-23702800	Enhancers	Dnd41	blood
2	chr11:23700800-23702600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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