Variant report
| Variant | rs11027442 |
|---|---|
| Chromosome Location | chr11:23718243-23718244 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10741989 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10741991 | 0.81[EUR][1000 genomes] |
| rs10767103 | 0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10767107 | 0.85[EUR][1000 genomes] |
| rs10767108 | 0.85[EUR][1000 genomes] |
| rs10834167 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10834168 | 0.80[EUR][1000 genomes] |
| rs10834169 | 0.82[EUR][1000 genomes] |
| rs10834170 | 0.81[EUR][1000 genomes] |
| rs10834174 | 0.81[EUR][1000 genomes] |
| rs10834175 | 0.80[EUR][1000 genomes] |
| rs11027447 | 0.84[EUR][1000 genomes] |
| rs11027460 | 0.81[EUR][1000 genomes] |
| rs11602457 | 0.82[EUR][1000 genomes] |
| rs4244504 | 0.85[EUR][1000 genomes] |
| rs4620716 | 0.83[EUR][1000 genomes] |
| rs4630297 | 0.80[EUR][1000 genomes] |
| rs4922664 | 0.80[EUR][1000 genomes] |
| rs4922665 | 0.83[EUR][1000 genomes] |
| rs4923121 | 0.81[EUR][1000 genomes] |
| rs6483978 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6483979 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7101422 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs7123134 | 0.83[EUR][1000 genomes] |
| rs7127586 | 0.80[EUR][1000 genomes] |
| rs7127739 | 0.80[EUR][1000 genomes] |
| rs72873434 | 0.95[EUR][1000 genomes] |
| rs7924562 | 0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7943102 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv553757 | chr11:23564329-23896729 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv469942 | chr11:23677246-23723766 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv897062 | chr11:23687928-24031627 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv916840 | chr11:23710275-24064119 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:23714400-23723600 | Weak transcription | Dnd41 | blood |
| 2 | chr11:23714600-23718600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
