Variant report

Variant	rs11602457
Chromosome Location	chr11:23749172-23749173
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFYB	chr11:23748952-23749220	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000255193	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10458857	0.91[EUR][1000 genomes]
rs10767107	0.94[EUR][1000 genomes]
rs10767108	0.97[EUR][1000 genomes]
rs10767111	0.88[EUR][1000 genomes]
rs10834175	0.87[EUR][1000 genomes]
rs10834184	0.95[EUR][1000 genomes]
rs11027442	0.82[EUR][1000 genomes]
rs11027447	0.89[EUR][1000 genomes]
rs11027460	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12270631	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4244504	0.94[EUR][1000 genomes]
rs4562829	0.88[EUR][1000 genomes]
rs4562830	0.90[EUR][1000 genomes]
rs4620716	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4922665	0.95[EUR][1000 genomes]
rs6483978	0.81[EUR][1000 genomes]
rs6483979	0.82[EUR][1000 genomes]
rs7101422	0.81[EUR][1000 genomes]
rs7111096	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7123134	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72873434	0.80[EUR][1000 genomes]
rs7933415	0.90[EUR][1000 genomes]
rs7936911	0.88[EUR][1000 genomes]
rs7937313	0.89[EUR][1000 genomes]
rs7943102	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943495	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1816999	chr11:23723766-23750675	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv897063	chr11:23723766-23940407	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3508599	chr11:23744425-23768884	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3508600	chr11:23744425-23768884	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3339316	chr11:23747776-23753374	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3494091	chr11:23748676-23756424	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3494089	chr11:23749126-23755824	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23742000-23754600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:23746800-23750200	Enhancers	HSMM	muscle
3	chr11:23747400-23749400	Weak transcription	HSMMtube	muscle
4	chr11:23748200-23750800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:23748600-23749400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:23748600-23750000	Enhancers	NH-A	brain
7	chr11:23749000-23749200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:23749000-23750000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:23749000-23750000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr11:23749000-23750000	Enhancers	Hela-S3	cervix

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