Variant report

Variant	rs10458857
Chromosome Location	chr11:23734890-23734891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10741995	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10741996	1.00[ASN][1000 genomes]
rs10767107	0.88[EUR][1000 genomes]
rs10767108	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767111	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10767112	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs10834175	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10834184	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11027447	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11027460	0.92[EUR][1000 genomes]
rs11602457	0.91[EUR][1000 genomes]
rs12270631	0.83[EUR][1000 genomes]
rs4244504	0.88[EUR][1000 genomes]
rs4274196	1.00[ASN][1000 genomes]
rs4562829	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4562830	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620716	0.93[EUR][1000 genomes]
rs4922665	0.89[EUR][1000 genomes]
rs4923123	1.00[ASN][1000 genomes]
rs4923124	1.00[ASN][1000 genomes]
rs6483985	1.00[ASN][1000 genomes]
rs7104997	1.00[ASN][1000 genomes]
rs7108807	1.00[ASN][1000 genomes]
rs7111096	0.84[EUR][1000 genomes]
rs7118760	1.00[ASN][1000 genomes]
rs7119105	1.00[ASN][1000 genomes]
rs7123134	0.93[EUR][1000 genomes]
rs7126806	1.00[ASN][1000 genomes]
rs7933415	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936911	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7937313	0.85[EUR][1000 genomes]
rs7943102	0.91[EUR][1000 genomes]
rs7943495	1.00[CEU][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1816999	chr11:23723766-23750675	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv897063	chr11:23723766-23940407	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10458857	SVIP	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23734000-23736000	Active TSS	Dnd41	blood

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