Variant report
| Variant | rs7936911 |
|---|---|
| Chromosome Location | chr11:23733506-23733507 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10458857 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10767107 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10767108 | 0.91[EUR][1000 genomes] |
| rs10767111 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10834175 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10834184 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11027447 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11027453 | 0.89[ASN][1000 genomes] |
| rs11027460 | 0.89[EUR][1000 genomes] |
| rs11602457 | 0.88[EUR][1000 genomes] |
| rs12270631 | 0.80[EUR][1000 genomes] |
| rs4244504 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4562829 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4562830 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4620716 | 0.90[EUR][1000 genomes] |
| rs4922664 | 0.81[AFR][1000 genomes] |
| rs4922665 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7111096 | 0.81[EUR][1000 genomes] |
| rs7123134 | 0.90[EUR][1000 genomes] |
| rs7933415 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7937313 | 0.82[EUR][1000 genomes] |
| rs7943102 | 0.88[EUR][1000 genomes] |
| rs7943495 | 0.95[CEU][hapmap];0.84[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv553757 | chr11:23564329-23896729 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv897062 | chr11:23687928-24031627 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv916840 | chr11:23710275-24064119 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv1816999 | chr11:23723766-23750675 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv897063 | chr11:23723766-23940407 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:23732400-23733600 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
| 2 | chr11:23733200-23733600 | Enhancers | Dnd41 | blood |
