Variant report

Variant	rs11027447
Chromosome Location	chr11:23722214-23722215
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:23711821..23714725-chr11:23720399..23722381,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10458857	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10741989	0.82[EUR][1000 genomes]
rs10741995	1.00[ASN][1000 genomes]
rs10741996	1.00[ASN][1000 genomes]
rs10767103	0.82[EUR][1000 genomes]
rs10767107	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10767108	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767111	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10767112	1.00[ASN][1000 genomes]
rs10834167	0.82[EUR][1000 genomes]
rs10834175	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10834184	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11027442	0.84[EUR][1000 genomes]
rs11027460	0.89[EUR][1000 genomes]
rs11602457	0.89[EUR][1000 genomes]
rs12270631	0.82[EUR][1000 genomes]
rs4244504	0.92[EUR][1000 genomes]
rs4274196	1.00[ASN][1000 genomes]
rs4562829	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4562830	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4620716	0.90[EUR][1000 genomes]
rs4922665	0.90[EUR][1000 genomes]
rs4923123	1.00[ASN][1000 genomes]
rs4923124	1.00[ASN][1000 genomes]
rs6483978	0.83[EUR][1000 genomes]
rs6483979	0.84[EUR][1000 genomes]
rs6483985	1.00[ASN][1000 genomes]
rs7101422	0.82[EUR][1000 genomes]
rs7104997	1.00[ASN][1000 genomes]
rs7108807	1.00[ASN][1000 genomes]
rs7111096	0.81[EUR][1000 genomes]
rs7118760	1.00[ASN][1000 genomes]
rs7119105	1.00[ASN][1000 genomes]
rs7123134	0.90[EUR][1000 genomes]
rs7126806	1.00[ASN][1000 genomes]
rs72873434	0.81[EUR][1000 genomes]
rs7924562	0.82[EUR][1000 genomes]
rs7933415	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936911	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7943102	0.89[EUR][1000 genomes]
rs7943495	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv469942	chr11:23677246-23723766	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23714400-23723600	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links