Variant report
| Variant | rs10741989 |
|---|---|
| Chromosome Location | chr11:23706463-23706464 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10741991 | 0.80[EUR][1000 genomes] |
| rs10767103 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10767107 | 0.83[EUR][1000 genomes] |
| rs10767108 | 0.83[EUR][1000 genomes] |
| rs10834167 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10834168 | 0.81[EUR][1000 genomes] |
| rs10834169 | 0.81[EUR][1000 genomes] |
| rs10834170 | 0.80[EUR][1000 genomes] |
| rs10834174 | 0.80[EUR][1000 genomes] |
| rs11027433 | 0.80[EUR][1000 genomes] |
| rs11027442 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11027447 | 0.82[EUR][1000 genomes] |
| rs4244504 | 0.83[EUR][1000 genomes] |
| rs4620716 | 0.81[EUR][1000 genomes] |
| rs4922665 | 0.81[EUR][1000 genomes] |
| rs4923121 | 0.80[EUR][1000 genomes] |
| rs6483977 | 0.80[EUR][1000 genomes] |
| rs6483978 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6483979 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7101422 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7122808 | 0.80[EUR][1000 genomes] |
| rs7123134 | 0.81[EUR][1000 genomes] |
| rs72873434 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7924562 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv553757 | chr11:23564329-23896729 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv469942 | chr11:23677246-23723766 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv897062 | chr11:23687928-24031627 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:23704400-23708000 | Enhancers | Dnd41 | blood |
| 2 | chr11:23706000-23706600 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
