Variant report

Variant	rs71300381
Chromosome Location	chr3:145857804-145857805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:145851729..145854083-chr3:145855117..145857839,4	MCF-7	breast:
2	chr3:145856481..145858828-chr3:145868804..145871513,3	MCF-7	breast:
3	chr3:145848518..145850304-chr3:145857520..145859905,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13065572	1.00[AFR][1000 genomes]
rs13066226	1.00[AFR][1000 genomes]
rs13075648	1.00[AFR][1000 genomes]
rs13079521	1.00[AFR][1000 genomes]
rs13088659	1.00[AFR][1000 genomes]
rs13095139	1.00[AFR][1000 genomes]
rs34201307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34392701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34589717	1.00[AFR][1000 genomes]
rs34695557	1.00[AFR][1000 genomes]
rs34901222	1.00[AFR][1000 genomes]
rs35017529	1.00[AFR][1000 genomes]
rs35020806	1.00[AFR][1000 genomes]
rs35080774	1.00[AFR][1000 genomes]
rs35479343	1.00[AFR][1000 genomes]
rs35520151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35687630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35880277	1.00[AFR][1000 genomes]
rs62272613	1.00[AFR][1000 genomes]
rs71300372	1.00[AFR][1000 genomes]
rs71300373	1.00[AFR][1000 genomes]
rs71300374	1.00[AFR][1000 genomes]
rs71300377	1.00[AFR][1000 genomes]
rs71300383	1.00[AFR][1000 genomes]
rs71621137	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv877613	chr3:145833232-145912055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145832000-145870800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:145835800-145874000	Weak transcription	Psoas Muscle	Psoas
3	chr3:145840400-145874000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:145843600-145861200	Weak transcription	Right Ventricle	heart
5	chr3:145844600-145860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:145850400-145860200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:145850400-145864400	Weak transcription	HMEC	breast
8	chr3:145851600-145860400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr3:145851600-145864200	Weak transcription	Right Atrium	heart
10	chr3:145852600-145858000	Weak transcription	Small Intestine	intestine
11	chr3:145852600-145860400	Weak transcription	NH-A	brain
12	chr3:145852800-145860600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:145853200-145860400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:145853200-145861600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:145855200-145858800	Enhancers	Aorta	Aorta
16	chr3:145855400-145860400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:145855600-145858200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr3:145855800-145862000	Enhancers	Fetal Stomach	stomach
19	chr3:145856000-145858200	Enhancers	Ovary	ovary
20	chr3:145856000-145861400	Enhancers	Rectal Smooth Muscle	rectum
21	chr3:145856200-145858000	Enhancers	Brain Substantia Nigra	brain
22	chr3:145856200-145858600	Enhancers	Stomach Smooth Muscle	stomach
23	chr3:145856200-145859200	Enhancers	Adipose Nuclei	Adipose
24	chr3:145856200-145860200	Enhancers	Colon Smooth Muscle	Colon
25	chr3:145856200-145862200	Enhancers	Fetal Heart	heart
26	chr3:145856400-145861200	Weak transcription	HepG2	liver
27	chr3:145856400-145864200	Weak transcription	Left Ventricle	heart
28	chr3:145856400-145875800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr3:145856800-145858000	Genic enhancers	A549	lung
30	chr3:145856800-145858200	Enhancers	Fetal Intestine Small	intestine
31	chr3:145856800-145858400	Enhancers	Brain Anterior Caudate	brain
32	chr3:145856800-145858600	Enhancers	Fetal Lung	lung
33	chr3:145856800-145860400	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr3:145857000-145859400	Enhancers	Liver	Liver
35	chr3:145857200-145858000	Enhancers	NHDF-Ad	bronchial
36	chr3:145857200-145858200	Enhancers	Fetal Kidney	kidney
37	chr3:145857400-145858000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:145857400-145858000	Enhancers	HSMMtube	muscle
39	chr3:145857400-145858200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr3:145857400-145858200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:145857400-145858200	Enhancers	Brain Hippocampus Middle	brain
42	chr3:145857400-145858200	Enhancers	Placenta Amnion	Placenta Amnion
43	chr3:145857400-145858400	Enhancers	iPS-20b Cell Line	embryonic stem cell
44	chr3:145857400-145858600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr3:145857400-145860000	Enhancers	Osteobl	bone
46	chr3:145857600-145858000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:145857600-145858000	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr3:145857600-145858000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:145857600-145858000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr3:145857600-145858200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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