Variant report

Variant	rs35017529
Chromosome Location	chr3:145870091-145870092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145868830..145872262-chr3:145881585..145883218,3	MCF-7	breast:
2	chr3:145856481..145858828-chr3:145868804..145871513,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13065572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13066226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13075648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13079521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13088659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13095139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16857900	0.82[EUR][1000 genomes]
rs34041519	0.87[AMR][1000 genomes]
rs34092280	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34201307	1.00[AFR][1000 genomes]
rs34248972	0.87[AMR][1000 genomes]
rs34298175	1.00[AMR][1000 genomes]
rs34392701	1.00[AFR][1000 genomes]
rs34589717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34695557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34901222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35020806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35080774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35479343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35520151	1.00[AFR][1000 genomes]
rs35687630	1.00[AFR][1000 genomes]
rs35880277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35969739	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62272613	1.00[AFR][1000 genomes]
rs71300372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71300373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71300374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71300377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71300378	1.00[AMR][1000 genomes]
rs71300379	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71300380	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71300381	1.00[AFR][1000 genomes]
rs71300383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71621137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv877613	chr3:145833232-145912055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1011146	chr3:145859022-145911429	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012485	chr3:145861750-145947125	Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv536758	chr3:145861750-145947125	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145832000-145870800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:145835800-145874000	Weak transcription	Psoas Muscle	Psoas
3	chr3:145840400-145874000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:145856400-145875800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:145860400-145875600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:145860800-145873800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:145860800-145874000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:145860800-145874000	Weak transcription	Fetal Muscle Leg	muscle
9	chr3:145861000-145870200	Weak transcription	Brain Anterior Caudate	brain
10	chr3:145861000-145876400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:145861400-145870200	Weak transcription	Small Intestine	intestine
12	chr3:145861400-145870600	Weak transcription	NH-A	brain
13	chr3:145861800-145870200	Weak transcription	Brain Substantia Nigra	brain
14	chr3:145861800-145870400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:145861800-145870800	Weak transcription	Pancreas	Pancrea
16	chr3:145861800-145872200	Weak transcription	Adipose Nuclei	Adipose
17	chr3:145861800-145873800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:145861800-145873800	Weak transcription	HSMMtube	muscle
19	chr3:145861800-145874000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:145861800-145874000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:145862000-145871600	Strong transcription	HSMM	muscle
22	chr3:145862000-145873800	Weak transcription	NHLF	lung
23	chr3:145862400-145874000	Weak transcription	Lung	lung
24	chr3:145862600-145870800	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr3:145864400-145870800	Weak transcription	Esophagus	oesophagus
26	chr3:145864400-145870800	Weak transcription	Gastric	stomach
27	chr3:145864400-145872200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr3:145864400-145873000	Genic enhancers	Osteobl	bone
29	chr3:145864600-145870800	Weak transcription	Right Atrium	heart
30	chr3:145864800-145870400	Weak transcription	HMEC	breast
31	chr3:145865800-145870400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:145865800-145870800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr3:145866800-145870200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:145866800-145870200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr3:145866800-145870400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr3:145866800-145870600	Weak transcription	Aorta	Aorta
37	chr3:145866800-145873600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:145866800-145873800	Weak transcription	NHDF-Ad	bronchial
39	chr3:145867000-145873600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:145867000-145873800	Weak transcription	Fetal Lung	lung
41	chr3:145867800-145870200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr3:145867800-145870400	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr3:145868000-145874000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr3:145868200-145871400	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr3:145868400-145870400	Enhancers	Ovary	ovary
46	chr3:145868600-145870400	Strong transcription	Liver	Liver
47	chr3:145868800-145870400	Enhancers	Colon Smooth Muscle	Colon
48	chr3:145868800-145870400	Weak transcription	Fetal Kidney	kidney
49	chr3:145869000-145870200	Strong transcription	Fetal Intestine Large	intestine
50	chr3:145869000-145870200	Weak transcription	Rectal Smooth Muscle	rectum

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