Variant report

Variant	rs713358
Chromosome Location	chr1:45988267-45988268
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr1:45986470-45988984	A549	lung:	n/a	n/a
2	POLR2A	chr1:45986645-45988635	HepG2	liver:	n/a	n/a
3	EP300	chr1:45987145-45988625	A549	lung:	n/a	n/a
4	POLR2A	chr1:45986657-45988357	PFSK-1	brain:	n/a	n/a
5	POLR2A	chr1:45986478-45988388	SK-N-MC	brain:	n/a	n/a
6	POLR2A	chr1:45986485-45988729	Hela-S3	cervix:	n/a	n/a
7	HEY1	chr1:45987124-45988688	HepG2	liver:	n/a	n/a
8	RUNX3	chr1:45986564-45988351	GM12878	blood:	n/a	n/a
9	POLR2A	chr1:45986400-45988280	H1-hESC	embryonic stem cell:	n/a	n/a
10	FOSL2	chr1:45988034-45988328	A549	lung:	n/a	n/a
11	RFX5	chr1:45986992-45988879	Hela-S3	cervix:	n/a	chr1:45987244-45987253
12	POLR2A	chr1:45987191-45988404	U87	brain:	n/a	n/a
13	GATA3	chr1:45987074-45988775	A549	lung:	n/a	n/a
14	MAZ	chr1:45986747-45988549	K562	blood:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
15	MAX	chr1:45987027-45988710	Hela-S3	cervix:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
16	ETS1	chr1:45987158-45988320	A549	lung:	n/a	chr1:45987647-45987660 chr1:45987598-45987607
17	POLR2A	chr1:45986741-45988383	HUVEC	blood vessel:	n/a	n/a
18	POLR2A	chr1:45986814-45988725	Hela-S3	cervix:	n/a	n/a
19	MAX	chr1:45986698-45989010	A549	lung:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
20	PML	chr1:45986856-45988444	GM12878	blood:	n/a	n/a
21	POLR2A	chr1:45986441-45988300	GM12892	blood:	n/a	n/a
22	ATF2	chr1:45987163-45988423	GM12878	blood:	n/a	n/a
23	MAZ	chr1:45986818-45988311	GM12878	blood:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
24	CEBPB	chr1:45987380-45988739	A549	lung:	n/a	n/a
25	POLR2A	chr1:45986674-45988666	HCT-116	colon:	n/a	n/a
26	BATF	chr1:45988062-45988286	GM12878	blood:	n/a	n/a
27	POLR2A	chr1:45986018-45988461	GM12892	blood:	n/a	n/a
28	RELA	chr1:45987105-45988319	GM18951	blood:	n/a	n/a
29	SIN3AK20	chr1:45986844-45988285	MCF-7	breast:	n/a	n/a
30	SP1	chr1:45986694-45988854	A549	lung:	n/a	chr1:45987640-45987651 chr1:45987628-45987639
31	REST	chr1:45986925-45988335	H1-neurons	neurons:	n/a	chr1:45987560-45987580 chr1:45987563-45987576 chr1:45987560-45987580 chr1:45987568-45987578 chr1:45986951-45986971 chr1:45987082-45987096
32	MYC	chr1:45986734-45988706	K562	blood:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
33	UBTF	chr1:45986460-45988577	K562	blood:	n/a	n/a
34	POLR2A	chr1:45987057-45988379	SK-N-SH	brain:	n/a	n/a
35	JUND	chr1:45987309-45988398	K562	blood:	n/a	n/a
36	MAX	chr1:45986693-45988300	K562	blood:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
37	POLR2A	chr1:45986924-45988269	PFSK-1	brain:	n/a	n/a
38	MAZ	chr1:45986468-45988434	IMR90	lung:	n/a	chr1:45987231-45987241 chr1:45987230-45987241 chr1:45987231-45987240 chr1:45987232-45987239 chr1:45987227-45987242 chr1:45987230-45987241 chr1:45987230-45987240 chr1:45987231-45987240
39	RELA	chr1:45987303-45988294	GM10847	blood:	n/a	n/a
40	POLR2A	chr1:45986694-45988775	Hela-S3	cervix:	n/a	n/a
41	SIN3AK20	chr1:45987013-45988591	A549	lung:	n/a	n/a
42	POLR2A	chr1:45986324-45988374	GM12892	blood:	n/a	n/a
43	UBTF	chr1:45986806-45988606	K562	blood:	n/a	n/a
44	CBX3	chr1:45987097-45988636	K562	blood:	n/a	n/a
45	BRCA1	chr1:45987325-45988382	Hela-S3	cervix:	n/a	chr1:45987598-45987607
46	EP300	chr1:45987127-45988814	A549	lung:	n/a	n/a
47	POLR2A	chr1:45986992-45988404	U87	brain:	n/a	n/a
48	SMC3	chr1:45987069-45988702	Hela-S3	cervix:	n/a	n/a
49	MAFK	chr1:45987254-45988269	Hela-S3	cervix:	n/a	n/a
50	POLR2A	chr1:45986421-45988286	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:45984510..45988941-chr1:46031540..46035902,8	MCF-7	breast:
2	chr1:45973182..45975128-chr1:45984664..45989019,3	MCF-7	breast:
3	chr1:45184712..45189957-chr1:45986029..45989344,7	K562	blood:
4	chr1:45987412..45988278-chr1:153505933..153506459,2	Hela-S3	cervix:
5	chr1:45985920..45989261-chr1:46150872..46154561,4	K562	blood:
6	chr1:45982342..45989534-chr1:46006947..46020678,57	K562	blood:
7	chr1:45186094..45189073-chr1:45986029..45988855,6	K562	blood:
8	chr1:45975860..45989626-chr1:46030076..46041078,36	K562	blood:
9	chr1:45985760..45988673-chr3:181223417..181224917,2	K562	blood:
10	chr1:45283995..45285689-chr1:45985443..45988306,2	K562	blood:
11	chr1:45954972..45958180-chr1:45986651..45988959,5	K562	blood:
12	chr1:45273605..45276582-chr1:45986789..45988627,2	K562	blood:
13	chr1:45987671..45988301-chr12:49075542..49076208,2	Hela-S3	cervix:
14	chr1:45976870..45989534-chr1:46007918..46019226,54	K562	blood:
15	chr1:45805140..45807328-chr1:45987853..45992059,3	K562	blood:
16	chr1:45984465..45989261-chr1:46150683..46156386,7	K562	blood:
17	chr1:45988000..45988805-chr6:30688919..30689665,2	Hela-S3	cervix:
18	chr1:45985569..45992282-chr1:46014173..46025125,38	MCF-7	breast:
19	chr1:45987519..45988330-chr1:149223869..149224369,2	Hela-S3	cervix:
20	chr1:45987425..45988326-chr17:41465828..41466368,2	Hela-S3	cervix:
21	chr1:45923357..45924859-chr1:45987046..45988646,2	K562	blood:
22	chr1:45982844..45990993-chr1:46030121..46038313,25	K562	blood:
23	chr1:45980210..45995142-chr1:46046095..46057139,89	K562	blood:
24	chr1:45284090..45287076-chr1:45986937..45989870,4	K562	blood:
25	chr1:45974558..45995867-chr1:46046173..46057010,94	K562	blood:
26	chr1:45987644..45988470-chr7:66146973..66147500,2	Hela-S3	cervix:
27	chr1:45987401..45988329-chr15:101458772..101459648,2	Hela-S3	cervix:
28	chr1:45986151..45989227-chr1:46047437..46050636,3	MCF-7	breast:
29	chr1:45476953..45479637-chr1:45985604..45989189,5	K562	blood:
30	chr1:45239811..45242258-chr1:45985710..45988896,3	K562	blood:
31	chr1:45987426..45988309-chr16:1429020..1429960,2	Hela-S3	cervix:
32	chr1:45987441..45988328-chr20:48806947..48807576,2	HCT-116	colon:
33	chr1:45986916..45989039-chr1:46073191..46077083,3	K562	blood:
34	chr1:45987332..45989335-chr1:46087766..46089426,2	K562	blood:
35	chr1:45985342..45989391-chr1:46011113..46019467,18	MCF-7	breast:
36	chr1:45985980..45988948-chr1:46213742..46217743,4	K562	blood:
37	chr1:45982735..45988890-chr1:46031987..46038228,10	MCF-7	breast:
38	chr1:45987458..45988329-chr17:36981493..36982160,2	Hela-S3	cervix:
39	chr1:45956512..45959436-chr1:45986078..45988665,3	MCF-7	breast:
40	chr1:45307699..45310286-chr1:45986112..45988725,2	K562	blood:
41	chr1:45195127..45198642-chr1:45986086..45989017,4	K562	blood:

Variant related genes	Relation type
PRDX1	TF binding region
ENSG00000206737	Chromatin interaction
ENSG00000198520	Chromatin interaction
ENSG00000263791	Chromatin interaction
ENSG00000126107	Chromatin interaction
ENSG00000139620	Chromatin interaction
ENSG00000202444	Chromatin interaction
ENSG00000117425	Chromatin interaction
ENSG00000199377	Chromatin interaction
ENSG00000154237	Chromatin interaction
ENSG00000132780	Chromatin interaction
ENSG00000200169	Chromatin interaction
ENSG00000264294	Chromatin interaction
ENSG00000142937	Chromatin interaction
ENSG00000225721	Chromatin interaction
ENSG00000154710	Chromatin interaction
ENSG00000126088	Chromatin interaction
ENSG00000222009	Chromatin interaction
ENSG00000159596	Chromatin interaction
ENSG00000132763	Chromatin interaction
ENSG00000259583	Chromatin interaction
ENSG00000265529	Chromatin interaction
ENSG00000196230	Chromatin interaction
ENSG00000197429	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000172216	Chromatin interaction
ENSG00000200913	Chromatin interaction
ENSG00000132781	Chromatin interaction
ENSG00000159592	Chromatin interaction
ENSG00000059145	Chromatin interaction
ENSG00000238279	Chromatin interaction
ENSG00000132773	Chromatin interaction
ENSG00000117448	Chromatin interaction
ENSG00000108296	Chromatin interaction
ENSG00000159588	Chromatin interaction
ENSG00000235294	Chromatin interaction
ENSG00000226499	Chromatin interaction
ENSG00000070759	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1006216	0.86[CEU][hapmap];0.87[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1007858	0.82[AMR][1000 genomes]
rs10789464	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10890330	0.91[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11211101	0.82[CHB][hapmap]
rs11211111	0.86[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11211117	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11211118	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11211123	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11211124	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11211128	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11211137	0.82[EUR][1000 genomes]
rs11211139	0.83[EUR][1000 genomes]
rs12029322	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12037201	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12042903	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12046816	0.90[CEU][hapmap]
rs12049503	1.00[CEU][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap];0.82[EUR][1000 genomes]
rs12066142	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12067642	0.87[EUR][1000 genomes]
rs12077621	0.83[EUR][1000 genomes]
rs12564806	0.85[EUR][1000 genomes]
rs1494812	0.89[CEU][hapmap];0.84[CHB][hapmap]
rs1771551	0.81[CEU][hapmap]
rs1826691	0.86[CEU][hapmap];0.86[CHB][hapmap]
rs2055145	0.90[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2153609	0.82[CHB][hapmap]
rs2185549	0.82[CHB][hapmap]
rs28555082	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2883968	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3219463	0.82[CHB][hapmap]
rs3219472	0.82[CHB][hapmap]
rs34673142	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34768551	0.83[EUR][1000 genomes]
rs3790582	0.86[CEU][hapmap];0.86[CHB][hapmap]
rs3790583	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4633317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4660849	0.82[CHB][hapmap]
rs4660851	0.82[CEU][hapmap]
rs4660852	0.82[CHB][hapmap]
rs4660858	0.86[CEU][hapmap];0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4660863	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5015340	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55642258	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61788281	0.81[EUR][1000 genomes]
rs61788285	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61788336	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61788356	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6657284	0.86[CEU][hapmap];0.86[CHB][hapmap]
rs67683090	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7528573	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7531253	0.86[CEU][hapmap];0.86[CHB][hapmap]
rs7544178	0.82[CHB][hapmap]
rs7553318	0.82[CHB][hapmap]
rs781226	0.81[CEU][hapmap]
rs781232	0.81[CEU][hapmap]
rs868351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9326141	0.82[CHB][hapmap]
rs9429076	0.81[CEU][hapmap]
rs9429160	0.82[CHB][hapmap]
rs9727262	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9729395	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	esv1795802	chr1:45819489-46009818	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
3	esv1831217	chr1:45819489-46009818	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
4	nsv530016	chr1:45868543-46069020	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
5	nsv829726	chr1:45897581-46103186	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
6	nsv529631	chr1:45905936-46335246	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
7	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
8	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs713358	Hs.396207	cis	multi-tissue	Pritchard
rs713358	IPP	cis	multi-tissue	Pritchard
rs713358	TESK2	cis	Whole Blood	GTEx
rs713358	GPBP1L1	cis	Lymphoblastoid	GTEx
rs713358	IPP	cis	Lymphoblastoid	GTEx
rs713358	MUTYH	Cis_1M	lymphoblastoid	RTeQTL
rs713358	PRDX1	cis	Thyroid	GTEx
rs713358	MMACHC	cis	multi-tissue	Pritchard
rs713358	C2orf49	trans	lymphoblastoid	RTeQTL

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45985200-45988400	Active TSS	H9 Cell Line	embryonic stem cell
2	chr1:45985200-45988600	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr1:45985400-45988600	Active TSS	Hela-S3	cervix
4	chr1:45985400-45988800	Active TSS	A549	lung
5	chr1:45986000-45988400	Active TSS	Rectal Smooth Muscle	rectum
6	chr1:45986600-45988800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr1:45987600-45988400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:45987600-45988400	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr1:45987800-45988400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:45987800-45988400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr1:45987800-45988400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr1:45987800-45988400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:45987800-45988400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr1:45987800-45988400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:45987800-45988400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr1:45987800-45988400	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr1:45987800-45988400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr1:45987800-45988400	Flanking Active TSS	GM12878-XiMat	blood
19	chr1:45987800-45988400	Flanking Active TSS	HUVEC	blood vessel
20	chr1:45987800-45988400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
21	chr1:45987800-45988400	Flanking Active TSS	NH-A	brain
22	chr1:45987800-45988400	Flanking Active TSS	Osteobl	bone
23	chr1:45987800-45988600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr1:45987800-45988600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr1:45987800-45988600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:45987800-45988800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr1:45987800-45988800	Flanking Active TSS	HepG2	liver
28	chr1:45987800-45988800	Flanking Active TSS	K562	blood
29	chr1:45987800-45989000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr1:45987800-45989000	Flanking Active TSS	NHEK	skin
31	chr1:45988000-45988400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr1:45988000-45988400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:45988000-45988400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr1:45988000-45988400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:45988000-45988400	Flanking Active TSS	Brain Germinal Matrix	brain
36	chr1:45988000-45988400	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr1:45988000-45988400	Flanking Active TSS	Fetal Heart	heart
38	chr1:45988000-45988400	Enhancers	Small Intestine	intestine
39	chr1:45988000-45988400	Flanking Active TSS	NHDF-Ad	bronchial
40	chr1:45988000-45988600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
41	chr1:45988000-45988600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:45988000-45988600	Enhancers	Gastric	stomach
43	chr1:45988200-45988400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr1:45988200-45988400	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr1:45988200-45988400	Enhancers	Primary B cells from cord blood	blood
46	chr1:45988200-45988400	Enhancers	Primary hematopoietic stem cells	blood
47	chr1:45988200-45988400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr1:45988200-45988400	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr1:45988200-45988400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr1:45988200-45988400	Enhancers	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links