Variant report

Variant	rs7134455
Chromosome Location	chr12:10696164-10696165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs17809278	0.87[LWK][hapmap];0.80[MKK][hapmap];1.00[YRI][hapmap]
rs2417907	0.83[AFR][1000 genomes]
rs34783083	0.83[AFR][1000 genomes]
rs4620802	0.83[AFR][1000 genomes]
rs55693758	0.87[AFR][1000 genomes]
rs55776135	0.89[AFR][1000 genomes]
rs55777152	0.87[AFR][1000 genomes]
rs55922148	0.87[AFR][1000 genomes]
rs55924876	0.87[AFR][1000 genomes]
rs55936935	0.87[AFR][1000 genomes]
rs55962548	0.89[AFR][1000 genomes]
rs56386466	0.87[AFR][1000 genomes]
rs57357731	1.00[AMR][1000 genomes]
rs57616628	1.00[AMR][1000 genomes]
rs57668111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57845292	1.00[AMR][1000 genomes]
rs58384677	1.00[AMR][1000 genomes]
rs60126971	1.00[AMR][1000 genomes]
rs60319266	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60511227	1.00[AMR][1000 genomes]
rs60672887	1.00[AMR][1000 genomes]
rs61062134	1.00[AMR][1000 genomes]
rs61695075	1.00[AMR][1000 genomes]
rs6488298	0.83[AFR][1000 genomes]
rs6488299	0.83[AFR][1000 genomes]
rs6488300	0.83[AFR][1000 genomes]
rs6488301	0.83[AFR][1000 genomes]
rs7133248	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs7133795	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs7134067	0.83[AFR][1000 genomes]
rs7135046	0.83[AFR][1000 genomes]
rs7300423	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73054404	0.87[AFR][1000 genomes]
rs73054406	0.87[AFR][1000 genomes]
rs73054408	0.87[AFR][1000 genomes]
rs73054415	0.84[AFR][1000 genomes]
rs73054421	0.87[AFR][1000 genomes]
rs73070576	0.83[AFR][1000 genomes]
rs73070578	0.83[AFR][1000 genomes]
rs73070596	0.83[AFR][1000 genomes]
rs73072005	0.83[AFR][1000 genomes]
rs73072007	0.83[AFR][1000 genomes]
rs73072076	0.87[AFR][1000 genomes]
rs7954153	0.82[AFR][1000 genomes]
rs7959930	1.00[AMR][1000 genomes]
rs7964285	0.95[LWK][hapmap];1.00[YRI][hapmap]
rs7969250	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7974212	1.00[AMR][1000 genomes]
rs7976078	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7977513	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557456	chr12:10532326-10698255	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv898764	chr12:10537269-10698255	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv898765	chr12:10537269-10701992	Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv898766	chr12:10537269-10722585	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv557457	chr12:10545925-10698255	Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv557458	chr12:10546140-10698255	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv557459	chr12:10560591-10729821	Genic enhancers Enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv557477	chr12:10601690-10698255	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv557478	chr12:10604945-10698255	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv898772	chr12:10622047-10722585	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv557479	chr12:10644663-10729821	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv898773	chr12:10660850-10722585	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
13	nsv898774	chr12:10666025-10722585	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
14	nsv898775	chr12:10668694-10735786	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
15	nsv523828	chr12:10675295-10698255	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1039120	chr12:10675930-10755446	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
17	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10694000-10696200	Weak transcription	Thymus	Thymus
2	chr12:10694000-10697000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr12:10695800-10696200	ZNF genes & repeats	GM12878-XiMat	blood

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