Variant report

Variant	rs7141261
Chromosome Location	chr14:35411955-35411956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10130069	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10130509	0.87[ASN][1000 genomes]
rs10130773	0.95[ASN][1000 genomes]
rs10134907	0.83[ASN][1000 genomes]
rs10134914	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10136059	0.97[ASN][1000 genomes]
rs10140135	0.98[ASN][1000 genomes]
rs10142667	0.95[ASN][1000 genomes]
rs10142861	0.83[ASN][1000 genomes]
rs10143485	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10144430	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10145723	0.88[ASN][1000 genomes]
rs10146407	0.94[ASN][1000 genomes]
rs10146699	0.85[ASN][1000 genomes]
rs10151273	0.95[ASN][1000 genomes]
rs10151720	0.95[ASN][1000 genomes]
rs1028448	0.94[ASN][1000 genomes]
rs11156871	0.85[ASN][1000 genomes]
rs11540758	0.83[ASN][1000 genomes]
rs12435454	0.86[ASN][1000 genomes]
rs12436971	0.91[ASN][1000 genomes]
rs13379372	0.85[ASN][1000 genomes]
rs1568200	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17102962	0.84[ASN][1000 genomes]
rs2038254	0.88[ASN][1000 genomes]
rs2254990	0.86[ASN][1000 genomes]
rs2273154	0.95[ASN][1000 genomes]
rs2273157	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2383693	0.83[ASN][1000 genomes]
rs28384418	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28395170	0.80[ASN][1000 genomes]
rs28535942	0.85[ASN][1000 genomes]
rs28569331	0.85[ASN][1000 genomes]
rs28577270	0.83[ASN][1000 genomes]
rs28589276	0.85[ASN][1000 genomes]
rs3759548	0.94[ASN][1000 genomes]
rs3885855	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs45531432	0.85[ASN][1000 genomes]
rs4981258	0.92[ASN][1000 genomes]
rs4982234	0.86[ASN][1000 genomes]
rs4982235	0.86[ASN][1000 genomes]
rs4982236	0.86[ASN][1000 genomes]
rs60152856	0.99[ASN][1000 genomes]
rs61100068	0.98[ASN][1000 genomes]
rs7146776	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv1052162	chr14:35245349-35451187	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1053722	chr14:35257458-35465784	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1045939	chr14:35311074-35494703	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv456203	chr14:35311272-35512335	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
6	nsv564200	chr14:35311272-35512335	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
7	nsv901602	chr14:35367889-35571651	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv901603	chr14:35371697-35435651	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
10	nsv901604	chr14:35381137-35485748	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
11	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
12	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
13	esv1802718	chr14:35400075-35429777	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv1035925	chr14:35404661-35483420	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
15	nsv901605	chr14:35409214-35512335	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7141261	PPP2R3C	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35381400-35412200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr14:35390000-35412600	Weak transcription	Ovary	ovary
3	chr14:35394600-35424000	Weak transcription	Fetal Lung	lung
4	chr14:35396400-35425200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:35396600-35424800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:35397200-35412800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr14:35397800-35420600	Weak transcription	Thymus	Thymus
8	chr14:35399000-35412200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr14:35399600-35412200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr14:35400600-35427000	Weak transcription	Primary B cells from cord blood	blood
11	chr14:35400800-35412200	Weak transcription	Adipose Nuclei	Adipose
12	chr14:35401000-35421400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr14:35401000-35428800	Weak transcription	GM12878-XiMat	blood
14	chr14:35401000-35440400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr14:35401400-35412200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr14:35401400-35412200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr14:35401400-35412600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr14:35401400-35428800	Weak transcription	Stomach Mucosa	stomach
19	chr14:35402800-35412600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr14:35403000-35423800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr14:35403200-35425200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:35403600-35425200	Weak transcription	Gastric	stomach
23	chr14:35405800-35412800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr14:35406200-35412600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr14:35407000-35425000	Weak transcription	Spleen	Spleen
26	chr14:35408200-35425400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr14:35409000-35419000	Weak transcription	Liver	Liver
28	chr14:35409800-35412600	Weak transcription	HepG2	liver
29	chr14:35410000-35420600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:35410000-35425200	Weak transcription	Right Ventricle	heart
31	chr14:35411000-35434600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr14:35411400-35414400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:35411600-35412200	Weak transcription	Fetal Intestine Small	intestine
34	chr14:35411800-35412200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr14:35411800-35412600	Weak transcription	Primary T cells from cord blood	blood
36	chr14:35411800-35450000	Weak transcription	Brain Angular Gyrus	brain

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